G540779


Basic Information

Item Value
gene id G540779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70754396 ~ 70754614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU612422
CTCCGGCCTGGTCTGTATTCCATTACAGggaagtgttgtgtgtgtgtgtactgtggagTAATATCTGCCCTAATGTAAAGTGACAGCTAGAATTATGGTTGTACTCTCTATTTCTTTCATTTAGGCTTTCAGCTTTGTCTTTCCTGCTAACTGTAAAAGGTTATTTTACTCACACACTGTATTCCAATGTGTGTAAATATGACTGTATCCGCATATTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU612422 True 219 lncRNA 0.39 1 70754396 70754614

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 132886 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 155208 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 196298 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 696333 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 715939 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 926987 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1207310 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1256481 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1319536 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 1363124 72117738 ~ 72135463 (+)
G540771 NA non-coding upstream 9014 70745179 ~ 70745382 (+)
G540745 NA non-coding upstream 29169 70724992 ~ 70725227 (+)
G540714 NA non-coding upstream 56658 70697494 ~ 70697738 (+)
G540251 NA non-coding upstream 121597 70632332 ~ 70632799 (+)
G540249 NA non-coding upstream 125278 70628841 ~ 70629118 (+)
G540883 NA non-coding downstream 100188 70854802 ~ 70855116 (+)
G540885 NA non-coding downstream 101262 70855876 ~ 70856103 (+)
G541458 NA non-coding downstream 577099 71331713 ~ 71331915 (+)
G541528 NA non-coding downstream 638120 71392734 ~ 71392969 (+)
G541544 NA non-coding downstream 649426 71404040 ~ 71404289 (+)
G540179 NA other upstream 270028 70481950 ~ 70484368 (+)
G539959 NA other upstream 734919 70015270 ~ 70019477 (+)
G541903 NA other downstream 1045426 71800040 ~ 71804462 (+)
G542053 NA other downstream 1346766 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1396406 72151020 ~ 72152394 (+)
saa saa other downstream 1910846 72665460 ~ 72666872 (+)
G542890 NA other downstream 2011067 72765681 ~ 72766851 (+)

Expression


Co-expression Network