G540885


Basic Information

Item Value
gene id G540885
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70855876 ~ 70856103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU612535
CTAGGGCATAAGTACCAGCCGATGCAGGCATTCTGAGAATAATACTAGTCGGGCCCAACTTAGTGTTAATTCTGTTGATCGCTTTCAGGAGCGACCTGACTCGGTCATAAGGAATTCCTAGAGCAAAGGACATATGAGCCAGCCATTACGGAAATTGGAGCAGGTATATTTTTTTGACCGAAGCGAAGTcattatctctctacctctcgcaTTAGGTAACGCGAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU612535 True 228 lncRNA 0.45 1 70855876 70856103

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 234366 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 256688 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 297778 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 797813 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 817419 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 825498 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 1105821 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 1154992 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 1218047 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 1261635 72117738 ~ 72135463 (+)
G540883 NA non-coding upstream 760 70854802 ~ 70855116 (+)
G540779 NA non-coding upstream 101262 70754396 ~ 70754614 (+)
G540771 NA non-coding upstream 110494 70745179 ~ 70745382 (+)
G540745 NA non-coding upstream 130649 70724992 ~ 70725227 (+)
G540714 NA non-coding upstream 158138 70697494 ~ 70697738 (+)
G541458 NA non-coding downstream 475610 71331713 ~ 71331915 (+)
G541528 NA non-coding downstream 536631 71392734 ~ 71392969 (+)
G541544 NA non-coding downstream 547937 71404040 ~ 71404289 (+)
G541546 NA non-coding downstream 548867 71404970 ~ 71405213 (+)
G541547 NA non-coding downstream 550021 71406124 ~ 71406339 (+)
G540179 NA other upstream 371508 70481950 ~ 70484368 (+)
G539959 NA other upstream 836399 70015270 ~ 70019477 (+)
G541903 NA other downstream 943937 71800040 ~ 71804462 (+)
G542053 NA other downstream 1245277 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 1294917 72151020 ~ 72152394 (+)
saa saa other downstream 1809357 72665460 ~ 72666872 (+)
G542890 NA other downstream 1909578 72765681 ~ 72766851 (+)

Expression


Co-expression Network