G541544


Basic Information

Item Value
gene id G541544
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71404040 ~ 71404289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613223
ctctgaacgaactttatttgactctttgcaaactggaatccatttatccggaggctgcattcattgttgctggggattttaacaaggctaatctgaaaacaagactcccaaaattttatcagcatatcgattgcgcaaccaggggtggaaaaaccttggatcattgttactctaacttccgcgacgcatataaggccctgccccgccctcctttcggaaaagctgaccacgactccattttgttgatccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613223 True 250 lncRNA 0.45 1 71404040 71404289

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 782530 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 804852 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 845942 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1345977 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1365583 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 277312 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 557635 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 606806 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 669861 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 713449 72117738 ~ 72135463 (+)
G541528 NA non-coding upstream 11071 71392734 ~ 71392969 (+)
G541458 NA non-coding upstream 72125 71331713 ~ 71331915 (+)
G540885 NA non-coding upstream 547937 70855876 ~ 70856103 (+)
G540883 NA non-coding upstream 548924 70854802 ~ 70855116 (+)
G540779 NA non-coding upstream 649426 70754396 ~ 70754614 (+)
G541546 NA non-coding downstream 681 71404970 ~ 71405213 (+)
G541547 NA non-coding downstream 1835 71406124 ~ 71406339 (+)
G541731 NA non-coding downstream 155289 71559578 ~ 71559855 (+)
G541741 NA non-coding downstream 161223 71565512 ~ 71565720 (+)
G541754 NA non-coding downstream 173965 71578254 ~ 71578500 (+)
G540179 NA other upstream 919672 70481950 ~ 70484368 (+)
G539959 NA other upstream 1384563 70015270 ~ 70019477 (+)
G541903 NA other downstream 395751 71800040 ~ 71804462 (+)
G542053 NA other downstream 697091 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 746731 72151020 ~ 72152394 (+)
saa saa other downstream 1261171 72665460 ~ 72666872 (+)
G542890 NA other downstream 1361392 72765681 ~ 72766851 (+)

Expression


Co-expression Network