G541546


Basic Information

Item Value
gene id G541546
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71404970 ~ 71405213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613225
gcgcagaccagctggccggtgtgtttacggacatattcaatcaatccctataccagtctgctgttcccacatgcttcaagagggccaccattgttcctgttcccaagaatgctaaggtaactgagctaaacgactaccgccccgtagcactcacttccgtcatcatgaagtgctttgagagactagtcaaggaccatatcacctccaccctacccgacaccctagacccactccaatttgctta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613225 True 244 lncRNA 0.51 1 71404970 71405213

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 783460 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 805782 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 846872 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1346907 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1366513 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 276388 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 556711 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 605882 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 668937 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 712525 72117738 ~ 72135463 (+)
G541544 NA non-coding upstream 681 71404040 ~ 71404289 (+)
G541528 NA non-coding upstream 12001 71392734 ~ 71392969 (+)
G541458 NA non-coding upstream 73055 71331713 ~ 71331915 (+)
G540885 NA non-coding upstream 548867 70855876 ~ 70856103 (+)
G540883 NA non-coding upstream 549854 70854802 ~ 70855116 (+)
G541547 NA non-coding downstream 911 71406124 ~ 71406339 (+)
G541731 NA non-coding downstream 154365 71559578 ~ 71559855 (+)
G541741 NA non-coding downstream 160299 71565512 ~ 71565720 (+)
G541754 NA non-coding downstream 173041 71578254 ~ 71578500 (+)
G541766 NA non-coding downstream 181889 71587102 ~ 71587523 (+)
G540179 NA other upstream 920602 70481950 ~ 70484368 (+)
G539959 NA other upstream 1385493 70015270 ~ 70019477 (+)
G541903 NA other downstream 394827 71800040 ~ 71804462 (+)
G542053 NA other downstream 696167 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 745807 72151020 ~ 72152394 (+)
saa saa other downstream 1260247 72665460 ~ 72666872 (+)
G542890 NA other downstream 1360468 72765681 ~ 72766851 (+)

Expression


Co-expression Network