G541754


Basic Information

Item Value
gene id G541754
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71578254 ~ 71578500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613447
ctattaatgaattattctttacctcaagtcagtctcatctgaacatcgtaaattgttggttatctgcatgaacccagccttaactataaatcatccatacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacgagtaatgtaacctaacaatttcacaacaactaccttatacacacaagtgtaaagggatgaagaatatgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613447 True 247 lncRNA 0.36 1 71578254 71578500

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 956744 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 979066 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1020156 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1520191 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1539797 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 103101 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 383424 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 432595 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 495650 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 539238 72117738 ~ 72135463 (+)
G541741 NA non-coding upstream 12534 71565512 ~ 71565720 (+)
G541731 NA non-coding upstream 18399 71559578 ~ 71559855 (+)
G541547 NA non-coding upstream 171915 71406124 ~ 71406339 (+)
G541546 NA non-coding upstream 173041 71404970 ~ 71405213 (+)
G541544 NA non-coding upstream 173965 71404040 ~ 71404289 (+)
G541766 NA non-coding downstream 8602 71587102 ~ 71587523 (+)
G541785 NA non-coding downstream 22927 71601427 ~ 71601719 (+)
G541788 NA non-coding downstream 25795 71604295 ~ 71604827 (+)
G541794 NA non-coding downstream 30847 71609347 ~ 71613696 (+)
G541800 NA non-coding downstream 37438 71615938 ~ 71616217 (+)
G540179 NA other upstream 1093886 70481950 ~ 70484368 (+)
G539959 NA other upstream 1558777 70015270 ~ 70019477 (+)
G541903 NA other downstream 221540 71800040 ~ 71804462 (+)
G542053 NA other downstream 522880 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 572520 72151020 ~ 72152394 (+)
saa saa other downstream 1086960 72665460 ~ 72666872 (+)
G542890 NA other downstream 1187181 72765681 ~ 72766851 (+)

Expression


Co-expression Network