G541768


Basic Information

Item Value
gene id G541768
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71588622 ~ 71589102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613461
cttagtttgacctgtttagtcgacatataatatgtaattttgaagttttgatgcgcaacttttcgggaccagaggaaattttgggtgcatttcagctgatattgttagcagatgctaatacaaagacacaagacttgaaaccaaacaatgttttgggtaagtatgaacccttccagtacattctgaacgaagaccatcaaaggtaagggaatatttatgctgaaattgtgtgtttctgttgactccaacatagcggagaaatattgcttatgtctgagcgccgtctcagaatattgaatagtgagcgatttctgtaacgttaaaaagaaatgtaacaaagcgattgcattaagaagcagtgtatctttctaactatatgtagaacatgtatatttagtcaaagtttatgatgtctatttacgttatcttgcagCACTATCTATATTTTCTCCGGACATTtttcagtattttctgaacatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613461 True 481 lncRNA 0.35 1 71588622 71589102

Neighbor

gene id symbol gene type direction distance location
LOC110526494 LOC106587461 coding downstream 53559 71414442 ~ 71535063 (-)
syt9a LOC106587460 coding downstream 213043 71334166 ~ 71375579 (-)
LOC110526491 LOC106587459 coding downstream 281609 71269160 ~ 71307013 (-)
LOC110506109 LOC106587443 coding downstream 358217 71228447 ~ 71230405 (-)
mafa maf coding downstream 451733 71016047 ~ 71136889 (-)
LOC110526497 NA coding upstream 104741 71693843 ~ 71701431 (-)
LOC110526499 LOC106587462 coding upstream 123536 71712638 ~ 71722782 (-)
LOC118964929 LOC106587492 coding upstream 139563 71728665 ~ 71735270 (-)
LOC118965039 LOC106595510 coding upstream 145240 71734342 ~ 71764626 (-)
LOC118965040 NA coding upstream 200755 71789857 ~ 71796840 (-)
G541753 NA non-coding downstream 13725 71574636 ~ 71574897 (-)
G541750 NA non-coding downstream 16442 71571912 ~ 71572180 (-)
G541730 NA non-coding downstream 40317 71548086 ~ 71548305 (-)
G541674 NA non-coding downstream 119303 71467072 ~ 71469319 (-)
G541560 NA non-coding downstream 174406 71413998 ~ 71414216 (-)
G541770 NA non-coding upstream 751 71589853 ~ 71590182 (-)
G541797 NA non-coding upstream 18637 71607739 ~ 71613032 (-)
G541798 NA non-coding upstream 20429 71609531 ~ 71613840 (-)
G541799 NA non-coding upstream 21992 71611094 ~ 71611421 (-)
G541811 NA non-coding upstream 34908 71624010 ~ 71624297 (-)
LOC110526488 LOC106562298 other downstream 922761 70623828 ~ 70666213 (-)
G540376 NA other downstream 1481447 70103798 ~ 70107175 (-)
G539714 NA other downstream 1898607 69688907 ~ 69690015 (-)
G539674 LOC106587381 other downstream 1972303 69615754 ~ 69616671 (-)
LOC110526462 NA other downstream 2299126 69272988 ~ 69289496 (-)
G543091 NA other upstream 1011173 72600275 ~ 72721818 (-)
G543092 NA other upstream 1070354 72659456 ~ 72666713 (-)
G543224 LOC106587514 other upstream 1220675 72809777 ~ 72810172 (-)
G543313 LOC106587506 other upstream 1408426 72997528 ~ 73020000 (-)

Expression


Co-expression Network