G541788


Basic Information

Item Value
gene id G541788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71604295 ~ 71604827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613482
gtcagtgtgttggcagcagccactcaatgttagtccTTGAtgtcgggtggttgttgtccttgatgatctttatggacttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctcttgagagccttacggttgtgggcggagcagttgccgtaccaggcagtgatacagcctgacaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccgaatttcttcagcctcctgaggttgaagaggtgctgctgcgccttcttcacgacgctgtctgtgtgggtggaccaattcagtttgtccatgatgtgtacgccgaggaacttaaaaaacttactaccctctccagtactgtcccatcgatgtggatagggggatgctccctctgctgtttcctgaagtccacaatcatctccttaattttgttgacgttgagtgtgaggttattttcctgacaccacactccgaggg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613482 True 533 lncRNA 0.51 1 71604295 71604827

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 982785 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1005107 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1046197 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1546232 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1565838 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 76774 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 357097 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 406268 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 469323 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 512911 72117738 ~ 72135463 (+)
G541785 NA non-coding upstream 2576 71601427 ~ 71601719 (+)
G541766 NA non-coding upstream 16772 71587102 ~ 71587523 (+)
G541754 NA non-coding upstream 25795 71578254 ~ 71578500 (+)
G541741 NA non-coding upstream 38575 71565512 ~ 71565720 (+)
G541731 NA non-coding upstream 44440 71559578 ~ 71559855 (+)
G541794 NA non-coding downstream 4520 71609347 ~ 71613696 (+)
G541800 NA non-coding downstream 11111 71615938 ~ 71616217 (+)
G541821 NA non-coding downstream 25661 71630488 ~ 71630879 (+)
G541892 NA non-coding downstream 85956 71690783 ~ 71692049 (+)
G541894 NA non-coding downstream 87333 71692160 ~ 71692463 (+)
G540179 NA other upstream 1119927 70481950 ~ 70484368 (+)
G539959 NA other upstream 1584818 70015270 ~ 70019477 (+)
G541903 NA other downstream 195213 71800040 ~ 71804462 (+)
G542053 NA other downstream 496553 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 546193 72151020 ~ 72152394 (+)
saa saa other downstream 1060633 72665460 ~ 72666872 (+)
G542890 NA other downstream 1160854 72765681 ~ 72766851 (+)

Expression


Co-expression Network