G541794


Basic Information

Item Value
gene id G541794
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71609347 ~ 71613696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613488
gcatgaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcaacataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaacagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccatcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaagaCACCAGCATAAAagacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaacagaataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagaataaaaacaccagcataaaaaacaccagcataaaacaccagcataaaaaacaccagaataaaaaac
>TU613490
gcatgaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcaacataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaacagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccatcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaagaCACCAGCATAAAagacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacaccagcataaaaaacaccagaataaaacaccagcataaaaaacaccagcataaaaaacaccagaataaaacaccagcataaaaaacaccagcataaaaaacacgcataaaaaacacc
>TU613491
gcatgaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacacgcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaac
>TU613489
acaccagcataaaaaacaccagcataaaacaccagcataaaaaacatcataaaaaaacatcagaataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacatcagaataaaaaacaccagcataaaaaacatcagcataaaaaacatcagcataaaaaacaccagaataaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaccagcataaaaaacaacagaataaaaaacaccagcataaaaaacaccagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacatcagcataaaaaacaccagaataaaaacaccagcataaaaaacaccagcataaaaaacaccagaataaaacatcagcataaaaaacaccagaataaaaaacatcagcataaaaaacatcagcataaaaaacaccagcataaaaaacaccagcataaaaaaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106581609

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613488 False 765 lncRNA 0.31 4 71609347 71613696
TU613490 False 630 lncRNA 0.32 2 71609347 71610133
TU613491 False 234 lncRNA 0.32 2 71609347 71610722
TU613489 True 607 lncRNA 0.30 2 71611547 71613280

Neighbor

gene id symbol gene type direction distance location
cmc2 cmc2 coding upstream 987837 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1010159 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1051249 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1551284 70049150 ~ 70058063 (+)
LOC110525047 psf2 coding upstream 1570890 70036194 ~ 70039507 (+)
LOC110526495 LOC106587464 coding downstream 67905 71681601 ~ 71690360 (+)
LOC118964930 NA coding downstream 348228 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 397399 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 460454 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 504042 72117738 ~ 72135463 (+)
G541788 NA non-coding upstream 4520 71604295 ~ 71604827 (+)
G541785 NA non-coding upstream 7628 71601427 ~ 71601719 (+)
G541766 NA non-coding upstream 21824 71587102 ~ 71587523 (+)
G541754 NA non-coding upstream 30847 71578254 ~ 71578500 (+)
G541741 NA non-coding upstream 43627 71565512 ~ 71565720 (+)
G541800 NA non-coding downstream 2242 71615938 ~ 71616217 (+)
G541821 NA non-coding downstream 16792 71630488 ~ 71630879 (+)
G541892 NA non-coding downstream 77087 71690783 ~ 71692049 (+)
G541894 NA non-coding downstream 78464 71692160 ~ 71692463 (+)
G541904 NA non-coding downstream 100204 71713900 ~ 71807250 (+)
G540179 NA other upstream 1124979 70481950 ~ 70484368 (+)
G539959 NA other upstream 1589870 70015270 ~ 70019477 (+)
G541903 NA other downstream 186344 71800040 ~ 71804462 (+)
G542053 NA other downstream 487684 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 537324 72151020 ~ 72152394 (+)
saa saa other downstream 1051764 72665460 ~ 72666872 (+)
G542890 NA other downstream 1151985 72765681 ~ 72766851 (+)

Expression


Co-expression Network