G541892


Basic Information

Item Value
gene id G541892
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71690783 ~ 71692049 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613596
aAAAGATTATAAATTATGAAGACAAGAGTTTTAGGTATGCAGCGGTTCAGAGCAGAAAGAGGACTTATCACAATATAACAAACCGTGATGACTTAGAAGATGTGCAAATCCTCGCATAGCCACACAGCCAATGCCTATCAACGTCTCAAATGTTAAGGTTAATTTGCCACCATTCCACTCTACTCTGGATAATGTCATATGATTTTGTACTTCTCCAACCAAAAATGCCTCTGAATGTTTCTATATCACTGGTCAGTGGTTGTTAACTATGATGGAAGAATATATCATGGTAATCCAATATCAAATAATGACATGGTAATATAAAATTATTGAAATCAGTGAAGAAATAAACATATTGCTGTTATCATCCTTTCCCTTCATCCTATCTGAATTCACCGGCTTTATTGCAAATTGTTAGAGGCTGTGAAAATCCCTGCTGGATTAATAACTAAAATGGTGTGCATAACCAAATGATATGATATTCATAAAATTGGTATACGTTGGTATGATTATCATACAGATAAAATGTCATGTTCTACCACTACCTTATATAGACCCACACATAAAGAGGAGACTTGTAAAGATCCATTGAAGTATTGGATGTTGCCCCCCCAAATGTCTGATTTTAACATGGGGTTTTCATTTTCTATTTGTATTCGCTTAATCTTCAAAGATGTGCATATATTTTTCAAAGGAAAGATCCTCTGTTTTGGTGTGATTCATTAAAGAAAATATATAGTTAATTTATTTTATGCTTAGGCCATACTCCATGGGTGTCATACAGTATGTAAAAATTATTCTTGTTTAAATTTAAAATACTTAATTGATTTTCAGTGATCCCAATTCTGGGCTCTTATGTTTGATTGATTGCTCTATCCCCTCTTGATTTAACAAGTTCCTGTTTACCTTCCACTTTCATGAAGACACAGCAAATACTTTCATTTTAAATGCTAGGTTTTCTTCTATGTTTTCCCCCGTACTTGTCCCATTCCCATAGACATATTTGGAACATTATTGTGTCACGTCTATATAACCATGCTACTTATTAGGTCAATGTGCACAAGGATGTTCGAAGGCACTCTAGTGGATGTTGGGAAGGTTGTTCTGATTCTGTTGCAATGGAATGGCAAGGCTACGTGCTACAGCAGTTTAATGGGTTTTCTGGTTTGAATGTACAAAACTTTTTTGGCATCAAATTAGGTTtgcaatttgacatttgctcttGTTTCTTTTACTCATGACACATTatggaaataaatgttttatc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU613596 True 1267 lncRNA 0.34 1 71690783 71692049

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 423 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1069273 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1091595 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1132685 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1632720 70049150 ~ 70058063 (+)
LOC118964930 NA coding downstream 269875 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 319046 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 382101 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 425689 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 465141 72157190 ~ 72181309 (+)
G541821 NA non-coding upstream 59904 71630488 ~ 71630879 (+)
G541800 NA non-coding upstream 74566 71615938 ~ 71616217 (+)
G541794 NA non-coding upstream 77087 71609347 ~ 71613696 (+)
G541788 NA non-coding upstream 85956 71604295 ~ 71604827 (+)
G541785 NA non-coding upstream 89064 71601427 ~ 71601719 (+)
G541894 NA non-coding downstream 111 71692160 ~ 71692463 (+)
G541904 NA non-coding downstream 21851 71713900 ~ 71807250 (+)
G541913 NA non-coding downstream 42816 71734865 ~ 71943278 (+)
G541914 NA non-coding downstream 45235 71737284 ~ 71740884 (+)
G541915 LOC106595537 non-coding downstream 50870 71742919 ~ 71750118 (+)
G540179 NA other upstream 1206415 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1651276 70036194 ~ 70039507 (+)
G539959 NA other upstream 1671306 70015270 ~ 70019477 (+)
G541903 NA other downstream 107991 71800040 ~ 71804462 (+)
G542053 NA other downstream 409331 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 458971 72151020 ~ 72152394 (+)
saa saa other downstream 973411 72665460 ~ 72666872 (+)
G542890 NA other downstream 1073632 72765681 ~ 72766851 (+)

Expression


Co-expression Network