G541913


Basic Information

Item Value
gene id G541913
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71734865 ~ 71943278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613641
AAAATAAAAACTTACCAATGGAGAAATCACGATGATTGAAATGGCAAAAACAAACGGGTTCAGTGGATGTAATTGTTGGTGATGTTGTTCCACCAGATGTTACAGGAAATGAGGTTGTAGGAAAAGTACTAGTTATGGGTGgctgagttgttgttgttgttgtcgtgggAACAAATTCTGTGGTGATCGGGATGTAATTGTTGGTGATGTTGTTCCACCAGATGTTACAGGAAATGAGGTTGTAGGAAAAGTACTAGTTATGGGTGgctgagttgttgttgttgttgtcgtgggAACAAATTCTGTGGTGAtcgggatgtgtgttgtgggaggacATCGACAACATTTCACTCGTATCTCGTAATCGaagcacttttgctgaagaccttgctcattgtttttacaaatcagtccaacggatggattgcaagtcacgtcttggccaagctgagagatctgaagtccagggtattgttttgctctacattcaactgcctctggagctgagcaaatg

Function

NR:

description
PREDICTED: mucin-2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613641 True 514 lncRNA 0.42 4 71734865 71943278

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 44505 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1113355 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1135677 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1176767 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1676802 70049150 ~ 70058063 (+)
LOC118964930 NA coding downstream 18646 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 67817 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 130872 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 174460 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 213912 72157190 ~ 72181309 (+)
G541894 NA non-coding upstream 42402 71692160 ~ 71692463 (+)
G541892 NA non-coding upstream 42816 71690783 ~ 71692049 (+)
G541821 NA non-coding upstream 103986 71630488 ~ 71630879 (+)
G541800 NA non-coding upstream 118648 71615938 ~ 71616217 (+)
G541794 NA non-coding upstream 121169 71609347 ~ 71613696 (+)
G541993 NA non-coding downstream 7416 71950694 ~ 71951034 (+)
G542005 NA non-coding downstream 25304 71968582 ~ 71968789 (+)
G542006 NA non-coding downstream 27119 71970397 ~ 71970902 (+)
G542009 NA non-coding downstream 31918 71975196 ~ 71975518 (+)
G540179 NA other upstream 1250497 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1695358 70036194 ~ 70039507 (+)
G539959 NA other upstream 1715388 70015270 ~ 70019477 (+)
G542053 NA other downstream 158102 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 207742 72151020 ~ 72152394 (+)
saa saa other downstream 722182 72665460 ~ 72666872 (+)
G542890 NA other downstream 822403 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1095343 73037953 ~ 73182742 (+)

Expression


Co-expression Network