G541934


Basic Information

Item Value
gene id G541934
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71829400 ~ 71830541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613667
gcactgggtagttgatgctcctgttgaggttgatgtaggagtagaggttggagttgtagtagaaggcagagtagttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggcagagtagttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttg

Function

NR:

description
PREDICTED: mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613667 True 227 lncRNA 0.44 2 71829400 71830541

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 139040 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1207890 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1230212 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1271302 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1771337 70049150 ~ 70058063 (+)
LOC118964930 NA coding downstream 131383 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 180554 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 243609 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 287197 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 326649 72157190 ~ 72181309 (+)
G541904 NA non-coding upstream 22150 71713900 ~ 71807250 (+)
G541915 LOC106595537 non-coding upstream 79282 71742919 ~ 71750118 (+)
G541914 NA non-coding upstream 88516 71737284 ~ 71740884 (+)
G541894 NA non-coding upstream 136937 71692160 ~ 71692463 (+)
G541892 NA non-coding upstream 137351 71690783 ~ 71692049 (+)
G541936 NA non-coding downstream 1220 71831761 ~ 71839778 (+)
G541993 NA non-coding downstream 120153 71950694 ~ 71951034 (+)
G542005 NA non-coding downstream 138041 71968582 ~ 71968789 (+)
G542006 NA non-coding downstream 139856 71970397 ~ 71970902 (+)
G541903 NA other upstream 24938 71800040 ~ 71804462 (+)
G540179 NA other upstream 1345032 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1789893 70036194 ~ 70039507 (+)
G542053 NA other downstream 270839 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 320479 72151020 ~ 72152394 (+)
saa saa other downstream 834919 72665460 ~ 72666872 (+)
G542890 NA other downstream 935140 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1208080 73037953 ~ 73182742 (+)

Expression


Co-expression Network