G541936


Basic Information

Item Value
gene id G541936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71831761 ~ 71839778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613669
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613670
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgttgaagttaagattgtagtagtgggtgtaggagtcgtggttgacagaactgttgttgttgttgttgttgttgtcgggatgtgtgttgtgggaggacattgacaacatttcactcgtatctcgtaatcgaagcacttttgctgaagaccttgctcattgttttt
>TU613671
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagtagttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttg
>TU613673
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagtagttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttg
>TU613674
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgttgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613675
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613678
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgtcgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613680
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgttgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613676
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgttgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc
>TU613679
accttcagagccagaggttggctgaccaaggttgatccagtctgaccacacacaactttcttcaccagtgcactgggtagttgatgctcctgttgaggtggatgtaggagtagaggttggagttgtagtagaaggcagagttgttgtttttgtggtagatggagctgttgaagttaagattgtagtagtgggtgtaggagtcgtggtcgacagaactgttgttgttgttgttgttgttgtc

Function

NR:

description
PREDICTED: mucin-5AC-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613669 False 241 lncRNA 0.47 2 71831761 71838320
TU613670 False 330 lncRNA 0.45 2 71831761 71832576
TU613671 False 239 lncRNA 0.47 2 71831761 71834915
TU613673 False 239 lncRNA 0.47 2 71831761 71836860
TU613674 False 241 lncRNA 0.47 2 71831761 71833945
TU613675 False 241 lncRNA 0.47 2 71831761 71835889
TU613678 False 241 lncRNA 0.47 2 71831761 71837348
TU613680 False 241 lncRNA 0.47 2 71831761 71839778
TU613676 False 241 lncRNA 0.47 2 71832733 71838806
TU613679 True 241 lncRNA 0.47 2 71832733 71839778

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 141401 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1210251 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1232573 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1273663 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1773698 70049150 ~ 70058063 (+)
LOC118964930 NA coding downstream 122146 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 171317 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 234372 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 277960 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 317412 72157190 ~ 72181309 (+)
G541934 NA non-coding upstream 1220 71829400 ~ 71830541 (+)
G541904 NA non-coding upstream 24511 71713900 ~ 71807250 (+)
G541915 LOC106595537 non-coding upstream 81643 71742919 ~ 71750118 (+)
G541914 NA non-coding upstream 90877 71737284 ~ 71740884 (+)
G541894 NA non-coding upstream 139298 71692160 ~ 71692463 (+)
G541993 NA non-coding downstream 110916 71950694 ~ 71951034 (+)
G542005 NA non-coding downstream 128804 71968582 ~ 71968789 (+)
G542006 NA non-coding downstream 130619 71970397 ~ 71970902 (+)
G542009 NA non-coding downstream 135418 71975196 ~ 71975518 (+)
G541903 NA other upstream 27299 71800040 ~ 71804462 (+)
G540179 NA other upstream 1347393 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1792254 70036194 ~ 70039507 (+)
G542053 NA other downstream 261602 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 311242 72151020 ~ 72152394 (+)
saa saa other downstream 825682 72665460 ~ 72666872 (+)
G542890 NA other downstream 925903 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1198843 73037953 ~ 73182742 (+)

Expression


Co-expression Network