G541993


Basic Information

Item Value
gene id G541993
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71950694 ~ 71951034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613742
cgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaacctcaactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaaggggccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctccttccatcagcaagggc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613742 True 341 lncRNA 0.46 1 71950694 71951034

Neighbor

gene id symbol gene type direction distance location
LOC110526495 LOC106587464 coding upstream 260334 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1329184 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1351506 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1392596 70551763 ~ 70558098 (+)
LOC110526484 LOC106587367 coding upstream 1892631 70049150 ~ 70058063 (+)
LOC118964930 NA coding downstream 10890 71961924 ~ 71967802 (+)
LOC110526507 LOC106587468 coding downstream 60061 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 123116 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 166704 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 206156 72157190 ~ 72181309 (+)
G541913 NA non-coding upstream 7416 71734865 ~ 71943278 (+)
G541931 NA non-coding upstream 10918 71824463 ~ 71939776 (+)
G541936 NA non-coding upstream 110916 71831761 ~ 71839778 (+)
G541934 NA non-coding upstream 120153 71829400 ~ 71830541 (+)
G541904 NA non-coding upstream 143444 71713900 ~ 71807250 (+)
G542005 NA non-coding downstream 17548 71968582 ~ 71968789 (+)
G542006 NA non-coding downstream 19363 71970397 ~ 71970902 (+)
G542009 NA non-coding downstream 24162 71975196 ~ 71975518 (+)
G542010 NA non-coding downstream 25582 71976616 ~ 71976941 (+)
G541903 NA other upstream 146232 71800040 ~ 71804462 (+)
G540179 NA other upstream 1466326 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1911187 70036194 ~ 70039507 (+)
G542053 NA other downstream 150346 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 199986 72151020 ~ 72152394 (+)
saa saa other downstream 714426 72665460 ~ 72666872 (+)
G542890 NA other downstream 814647 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1087587 73037953 ~ 73182742 (+)

Expression


Co-expression Network