G542006


Basic Information

Item Value
gene id G542006
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 71970397 ~ 71970902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613755
gggtagagagtgctgcagagagaaccgtcagttttttcacataattagacattacaatttgttgtacatcaagggcgggcatatgacctccctcccttggtggaccatgcatgactctaccagtcattatcccatgaggcacatactttagctatcttagcttttgcttttggtttgacgttccaccagattttgggattggggcctgtacacagatccaaatctgtgggttatgccaaatctttcttccacctgtctcaggtgtttgttaaatgtaagccatttgtcaaatttgatttgtcttgggatgccatacctgggtattagtttggtttgtagccacttaaagactgacctagcatcctccccttttgttattattgcctctacccatttggagaacctatctactatAACTAGGAGATAGCGTTTGCCTTTAGATAAATTGTCagggcccatgtcggtgtagtctatactaatgtcctgaaaacatgcattaggtacta

Function

NR:

description
uncharacterized protein LOC110515180, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613755 True 506 lncRNA 0.42 1 71970397 71970902

Neighbor

gene id symbol gene type direction distance location
LOC118964930 NA coding upstream 2595 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 280037 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1348887 70615476 ~ 70621510 (+)
si:ch73-103b9.2 cssa26h16orf46 coding upstream 1371209 70594747 ~ 70599188 (+)
LOC110526485 fam92b coding upstream 1412299 70551763 ~ 70558098 (+)
LOC110526507 LOC106587468 coding downstream 40193 72011095 ~ 72021875 (+)
LOC110526509 LOC106563533 coding downstream 103248 72074150 ~ 72098245 (+)
LOC110526510 pkp3 coding downstream 146836 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 186288 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 214170 72185072 ~ 72207042 (+)
G542005 NA non-coding upstream 1608 71968582 ~ 71968789 (+)
G541993 NA non-coding upstream 19363 71950694 ~ 71951034 (+)
G541931 NA non-coding upstream 30621 71824463 ~ 71939776 (+)
G542009 NA non-coding downstream 4294 71975196 ~ 71975518 (+)
G542010 NA non-coding downstream 5714 71976616 ~ 71976941 (+)
G542011 NA non-coding downstream 6312 71977214 ~ 71977481 (+)
G542021 NA non-coding downstream 30114 72001016 ~ 72001221 (+)
G542022 NA non-coding downstream 31014 72001916 ~ 72002219 (+)
G541903 NA other upstream 165935 71800040 ~ 71804462 (+)
G540179 NA other upstream 1486029 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 1930890 70036194 ~ 70039507 (+)
G542053 NA other downstream 130478 72101380 ~ 72102474 (+)
G542100 LOC106587475 other downstream 180118 72151020 ~ 72152394 (+)
saa saa other downstream 694558 72665460 ~ 72666872 (+)
G542890 NA other downstream 794779 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 1067719 73037953 ~ 73182742 (+)

Expression


Co-expression Network