G542053


Basic Information

Item Value
gene id G542053
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72101380 ~ 72102474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613820
ggaggtgagggccctggcaaaGTGGTTCCAGGAAAATAACATCtccttcaacgtcaacaaaatggaGCTAATCGGGGACTTCAGGAATCAACAGAGAGAGCACGCCTTTATTCACTTCAATGGGACCGCAGttgagaaggtgaaaagcttaaagttcctctgcatacacatcactgacaatctgaaatggtccacccacacagacagtatggtgaAGGCGCAACAACGCCTattcaacctcaagaggctgaaaaaatttgccttggcccctaagaccctcacaaacttttacagatgtacaattgagagcatcttgtcaggctgtatcaccacctggtacggcaactgcaccgcccgcaaccccAGGACTCTCTAGagtgtggtgtggtctgcccaatgcatcactgggggcacacactgcctgccccccaggacaccaacagcacccgatgtcacaggaaggtcaaaaagataatcaaggacatcaaccaccggAACCACGGTATGTTCACCCCcctgtcatccagaaggcgaggtcagtacaggtgtatcaaagctggggctgagagactgaaaaatagcttctatctcaaggccatcagactgttaaatagtcatcactagcccactaccacccggttactcaaacctacaccttagaggctgctgccctgtatacatagacatgaaatcacttgccactttaataatggaacactagtcactttagtaatgtttacatactggtTTACTCAttttgtatgtatgtactgtattctactgtattctagtcaatgccactctgacattgctcattgtaatatttatatatttcttaattccattcttttacttttagatttgtgtgtattattgtgaattgttagatactgctgcactgtcggagctaagaacacaagcatttcactacacccgcaaaaacatctgctaaatatgtgtatgtgaccaataagatgtatttgatttgacacaatccatgtcacaattgtctcgaggcttaaaaatgcttctttaacctgtttcctccccttcatctacactgattgaagtggatttaacaagtgacatcaataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU613820 True 1095 TUCP 0.44 1 72101380 72102474

Neighbor

gene id symbol gene type direction distance location
LOC110526509 LOC106563533 coding upstream 3135 72074150 ~ 72098245 (+)
LOC110526507 LOC106587468 coding upstream 79505 72011095 ~ 72021875 (+)
LOC118964930 NA coding upstream 133578 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 411020 71681601 ~ 71690360 (+)
cmc2 cmc2 coding upstream 1479870 70615476 ~ 70621510 (+)
LOC110526510 pkp3 coding downstream 15264 72117738 ~ 72135463 (+)
LOC110526514 LOC106563530 coding downstream 54716 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 82598 72185072 ~ 72207042 (+)
LOC110526517 LOC106587478 coding downstream 118874 72221348 ~ 72244464 (+)
LOC100136249 LOC100136249 coding downstream 184557 72287031 ~ 72294897 (+)
G542022 NA non-coding upstream 99161 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 100159 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 123899 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 124439 71976616 ~ 71976941 (+)
G542009 NA non-coding upstream 125862 71975196 ~ 71975518 (+)
G542092 NA non-coding downstream 39042 72141516 ~ 72142559 (+)
G542137 NA non-coding downstream 171842 72274316 ~ 72292811 (+)
G542162 NA non-coding downstream 194270 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 239438 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 242463 72344937 ~ 72345730 (+)
G541903 NA other upstream 296918 71800040 ~ 71804462 (+)
LOC110526485 fam92b other upstream 1547460 70551763 ~ 70558098 (+)
G540179 NA other upstream 1617012 70481950 ~ 70484368 (+)
LOC110525047 psf2 other upstream 2061873 70036194 ~ 70039507 (+)
G542100 LOC106587475 other downstream 48546 72151020 ~ 72152394 (+)
saa saa other downstream 562986 72665460 ~ 72666872 (+)
G542890 NA other downstream 663207 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 936147 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1270331 73190979 ~ 73392251 (+)

Expression


Co-expression Network