G542100 (LOC106587475)


Basic Information

Item Value
gene id G542100
gene name LOC106587475
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72151020 ~ 72152394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613870
GGAAGACTTTACTGCGCCAATAATCAATAATAGTTATAGCAATAGGAAAAATAATGCCACTTACAAGGGTCTACTACAAATACAATTGTTTACATTACACTTCCACCAGTATACTTGACAGCTAAATTCAATGTTCTTTGGACTTCAAAACAGCCATATACATTAGCATTACTGACAAGTGCTTTTCATGTCTGAAGTTAATATTcaaaatacacattttacattGATTCTGATAAAGTCAAGAGGCCGAAACCATTCCCTTGATTCAGAAAAAAACTCCACTGGTTGAGGTTCTACAGGGAAGCACTAAAATACTGTCCATATTTAGGGTCCTCCATTATTTCCAGAGGACTTCAATTGATTGATGCATGTGTACTCTCAGTCCTCCTCTTTCTCTGACACCTTGCGGAAGTTCTTCCTTTTGATGTTCCTACTAATGACAAAGCCAATAGGCGGCTGATCCTTCCTATCAATCAGCACGCCCTCTGCATCCCCCACCGGTGTCCACTTCCTCTTCCGCTCACTCTCCTTTGGGCGTTGGGGGGCGATTGCTTGGCCTAtaccctcctcttcttcatcatctAAGTGACAGAGACCCATCCCTGCCTTAGTTCGATCAGGCTTGTTAACTTCTGCAGATTCATCTTTCTGTGGCCGGCTAGGTCTGGAAAACACAATCTTATGCTCTGAGCTACTACTCTGGCCTTGGTTGAAAGTAGGTGTAAAAGGCTCTTCAGGATCATCTTCCATCgtgttctccttctccttctgctGCAGGCTTTGTATGTACTGCTGAGCCACCATGCTATTCTTGCTGTCACTGGTCTCTGGCACATCCTCCAGGTCGTAGCGCGTCCAGCGCTCAGGATTCACCAGGTAATCTGGCACTCCTCTCTTCTGAGGAGGCTTGCTGACCAATTCCCCCACCTTCTCCCCATACTTCTTTCCACTCGGCAGcagtgggggtggagggggacgTGCAAAGACCCCATCAATGACATTGTCCTGGCCCAGATGGGACGAGGACAGCTTAGCGGCACTCTCCAGGCAATCAAAGATGCTTCGGCTGCGGTTGGAAAAGCTTGAGCTGCCACCTGTCAGACTGAATGCGGGTTTCTTGGGACCGGGACCAGGGCAAGAGTTCTGGTGCTCTTCATCATCAGATGAGGACAAATCTTCCACCTCTGGGTCTATGGACTCATTACGCTCTTCAGGGTCGGAGTCACTCAGAGAGAGGTTATCTGTCAGCTTGTTACGTCCACCGTCTCCGTGGTCCTCTTGCTCACACATTGCTCTCAAGGGCCTGGGTCTGATGCCACAGGAAAAAAACAACTTTCAAACAGTCAAGGGG

Function

NR:

description
protein TSSC4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613870 True 1351 TUCP 0.48 2 72151020 72152394

Neighbor

gene id symbol gene type direction distance location
LOC110526510 pkp3 coding upstream 15557 72117738 ~ 72135463 (+)
LOC110526509 LOC106563533 coding upstream 52775 72074150 ~ 72098245 (+)
LOC110526507 LOC106587468 coding upstream 129145 72011095 ~ 72021875 (+)
LOC118964930 NA coding upstream 183218 71961924 ~ 71967802 (+)
LOC110526495 LOC106587464 coding upstream 460660 71681601 ~ 71690360 (+)
LOC110526514 LOC106563530 coding downstream 4796 72157190 ~ 72181309 (+)
LOC110526515 LOC106587477 coding downstream 32678 72185072 ~ 72207042 (+)
LOC110526517 LOC106587478 coding downstream 68954 72221348 ~ 72244464 (+)
LOC100136249 LOC100136249 coding downstream 134637 72287031 ~ 72294897 (+)
mybpc3 LOC106587482 coding downstream 145599 72297993 ~ 72339964 (+)
G542092 NA non-coding upstream 8461 72141516 ~ 72142559 (+)
G542022 NA non-coding upstream 148801 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 149799 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 173539 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 174079 71976616 ~ 71976941 (+)
G542137 NA non-coding downstream 121922 72274316 ~ 72292811 (+)
G542162 NA non-coding downstream 144350 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 189518 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 192543 72344937 ~ 72345730 (+)
G542180 NA non-coding downstream 194433 72346827 ~ 72347198 (+)
G542053 NA other upstream 48546 72101380 ~ 72102474 (+)
G541903 NA other upstream 346558 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1529546 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1597100 70551763 ~ 70558098 (+)
G540179 NA other upstream 1666652 70481950 ~ 70484368 (+)
saa saa other downstream 513066 72665460 ~ 72666872 (+)
G542890 NA other downstream 613287 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 886227 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1220411 73190979 ~ 73392251 (+)
G544565 NA other downstream 2135384 74287778 ~ 74288138 (+)

Expression


Co-expression Network