G542137


Basic Information

Item Value
gene id G542137
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72274316 ~ 72292811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613914
aggcagttaacccactgttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaaaaatgtaacagaatttcatcatgggtccctgatacTACACAGAAATggataattatggatatgaatgtcattctcttcatggggATCTATCCTAAATATGTACatatcctcctttgcatattTTGGGGATTATTCTACACAACGGCTATTACTTTAATGAGCtctgcccccaaacaagaccaaatttgcTTGGTCCGAAAGGAACCAAATCTGAACCAGTCATAGACATACGTCTATGTTTCATAAGTTTGGACAtcaaagtacagcacagtagagttcagtagagtacagtacagcagagcacagaacagtagagtacaatcgagtacagtagagtacagtaaagtagagctTAGTTCAGTActttacaatacagtactgtactgtacttttctttactgtactgtgctgaACTCTACTCAACttttatttactgtactgtatagtactgtgctgtccaaacttgtgaacccaactgtggtttgtgactactatgatttcccGTTGTAGCCAATTAAATTGCAGAAATTCCTTTACCGATTTTTGGGAAATTCCGTTACCAAATTTGGTTTGAATCATTTTTAATCATTTAATAATTTATTAACaaaattgatatcagtaaaatACTATAATAATTGATAGGTGTACTTGTTACATCTGTGACCTTTCTTTATCCTCCCTCATGAGGGAGAGTAAtgagaaaatatcttaaagatatgtggggttttggtaacggaatttcaaagcacaaggcaatgtttcttaaacttacagaaggcagaAACATGTACCCTAAAGTAAATTTGAACGTGTTAATATTAGTTGGAAGGGGTCTTTTCTTAACATTAAAGTAATTTTTAGGATGgcaaatggttgaaaaatgtatatttgCCTTAATttctcctatgaacttcacatgttggtgctcatgggtccttttacatggaaatgaccatATGTCCATGGCTGCCCCTAGGGCAGTAAATACTTTTTGTATTACCTTTTGTGCTTGAATTCTGCCCTTAGGGCACCAAAGTGATCCAAACCAAAATTAACATTACTGCACCCTGGGAAGCATTTAAACAATGCATTCCAGTTTGCTTAAAGTCTGCCCTCAGGGCACCAAGTGATCTTGACCCAAACTAACATTTCTGCCCCCACGGTAGCATAAACAGTCtattccattttttttgttgatatCGCTTATTCATCTAAActtttaataaaataaatgttaactGACCTATTGGCAGATTTGAGACCTAACTTAATAGTTATTTTAATTTTATAATTCAACATTAGTAGGAGGTAGGTTTCTGCTCAGCTAAGCTACATTTAGCTTAGCATTTTACTTTTCTTCCCCCAGAAGTTTATATAGCTCATTTAACTAAATATTTTTGATAAAGTAAATGGGAGCCGATTTACAGGTATATTAGAGACCCAGCTAGTTCTATTCTATGACTCAATATACTATCTATTAATTCAACATTAGTAGCTAAGAGGTTACTAAATGCTTAGCTAGCTTTCTTGCTCTGATTAGCTTAGCATAAGGCTGCTAGTTTGCTACATTTTACTCTTTGCTTCAAGTCAGGAGACAAGTTGTATCTTGGAGATACTGTCACATTTGTTTGACTACTGTAGCACAAAAAggattttaaaacattacaactTGTAACTCAAAGTTATTTACAAGATTCAGAGTTAGAAACCAATCGGATTGGTTCTGCCCTAAACCAATCAGATTCTTTCTGCCCTtagaacaaagttgactacacTTTAAGTAAATCTGCGTTGAAGCTCTTTTTCTCCCACATAAGTATTCATTCAACTCCACTGTCACTTGATAAATTCGAGGGAGTGGGTATTCACAGG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU613914 True 1949 lncRNA 0.36 2 72274316 72292811

Neighbor

gene id symbol gene type direction distance location
LOC110526517 LOC106587478 coding upstream 29852 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 67274 72185072 ~ 72207042 (+)
LOC110526514 LOC106563530 coding upstream 93007 72157190 ~ 72181309 (+)
LOC110526510 pkp3 coding upstream 138853 72117738 ~ 72135463 (+)
LOC110526509 LOC106563533 coding upstream 176071 72074150 ~ 72098245 (+)
mybpc3 LOC106587482 coding downstream 5182 72297993 ~ 72339964 (+)
LOC118965108 NA coding downstream 39825 72332636 ~ 72332690 (+)
LOC110526523 LOC106587484 coding downstream 278006 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 320884 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 339970 72632781 ~ 72638350 (+)
G542092 NA non-coding upstream 131757 72141516 ~ 72142559 (+)
G542022 NA non-coding upstream 272097 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 273095 72001016 ~ 72001221 (+)
G542011 NA non-coding upstream 296835 71977214 ~ 71977481 (+)
G542010 NA non-coding upstream 297375 71976616 ~ 71976941 (+)
G542162 NA non-coding downstream 3933 72296744 ~ 72296989 (+)
G542131 LOC106587483 non-coding downstream 49101 72341912 ~ 72343982 (+)
G542179 NA non-coding downstream 52126 72344937 ~ 72345730 (+)
G542180 NA non-coding downstream 54016 72346827 ~ 72347198 (+)
G542181 NA non-coding downstream 54639 72347450 ~ 72348095 (+)
G542100 LOC106587475 other upstream 121922 72151020 ~ 72152394 (+)
G542053 NA other upstream 171842 72101380 ~ 72102474 (+)
G541903 NA other upstream 469854 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1652842 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1720396 70551763 ~ 70558098 (+)
saa saa other downstream 372649 72665460 ~ 72666872 (+)
G542890 NA other downstream 472870 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 745810 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1079994 73190979 ~ 73392251 (+)
G544565 NA other downstream 1994967 74287778 ~ 74288138 (+)

Expression


Co-expression Network