G542131 (LOC106587483)


Basic Information

Item Value
gene id G542131
gene name LOC106587483
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72341912 ~ 72343982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613908
CGCGATCTGTCTCAGAACAATCCAGAAATGAAGGCCTTTGTGTGGCACCAACATTCAGCGCCAGAGGCTTAGCTTGCACTTGGTACATGCTGCACTCACCTTTCAAAGCCAACTTCCTGACACCTGAAATAACCTTGTCCATGGCCCAGACATTCTGCTCCTCTTTAAGCAATAAATTAGAACGATCCTGGGGGTAAAGCACAGTTCAACTACATTATTTTCAGTCCaagagacaaaacaaacaaagtCATAAAAGTCTCCACAACAACTAGGAagactgttgataaaacagtgcTCTCTTCCAATCCCACGTGACATCCAAGACTTTATCACTCATAGCGAGGAAGAATTGTTGACACTTAttgtcaaagataataaacatTTAAGTCATTGTCTTGTACTCTTGAGGAATGAATACAGGGCTTGTGAAGATACATGAACAGATTCATACTGGAGATTCAGTTGGCTCACATTGGGAGGGCTGAAAATGCAGCTGTCAGATTATATTTAACACATTGTCAGTACCCCTTCATTTAAAGCCGCTTCCATAAAATTCTCCTTTCAGTTACTTTATATTCTCATATGAAAAACAACCCTAGAATGAGGATTATGATTACATTTGCTACATATACAAATGAATAGCGATTATGGTAAGGCTTTAAAATCGACAGACCAGggaataacaataaaataaaacatatagcTAGCTACGGGCAGAACCTACAAAAAGATGGCACATAGATGCTTGCCTTAGCAAGAGACGTGACAGATGAATTCAGGCTTGTAACATCTTGATAATGAGTTTGCTCTAAAACAAGAAGCAGGCACTGGTGGCAAGGTTTCCTCTTTTGTTACATATTTGACAGCCAGTTTGGTGTTATCACACACAGGAATCAGTTGTAAATCCTGAAGGGCAAAACAAGTGTTGGCCAAAAGTCTCAGGTCTCAGAGAAGTCTCATTTAATGCCAGATTCCTTTTTTTGTGACAGTTGAGTCTGTTTCACACAGTGATTAAAGAAGTGCTCCCTGAATGATTTGTGTGCAGGGACCCACATGCACATGTTTTGTTGTTTATCAAAAACCTTTACTTTTTGTTATAgtgtcacagacacagacacacacacagacacacacacacacagacacacacacagacacacacacagacacacacacacacagacaaagagtttCTCAGTCTTTGATGCGAGGTATGTTGTATGCGTAGTGGACCAGAGGGAGCCCTCGGCTCTGGCAGAAGCAGGCTCGTCCACAGGCCTGCACCTGGTCTGAACTGTCGGACACAAACGAGTCCCCCTCGTCAGCGTACTCTGACTGGGCAGAGAGGGTGCCGCTGTCTGCCCAGTATCCCTCCGTACGCTGGCCCGCTGTCGCACCAGCCGAGAGGGTAGGGCAGCTGTGGGACTTCACCAAGTGTCTGCAGACTGAtgttgaggaggaagaggtcctGGCGTGTAGAGCCACCTGGCAGCGCTCACACATGCCTGTTTCCCCACAGAGCTGGGAGTACACCCCACAGTCATAGCCCAGCCGTGTGGAGGAGtctccatccccatccacaacccCAGAGCGCCCTGCACACTGCCCAGCCTTCATCCCCCGGGCTACAGCTCCATGGCCCCGCAGCCGCAGCCAGTCCTCCCGGAAGGCGGGGCTGAAGAAAACGTAGAGCACGGGGTTAAGGCATGCCGGTAGGGGGAAGAAGATGAGCGTGACGGACTTGGCGATCTCAGGGCCGCCTGCGGTGCCAGACCTGGCCAGTAGAGGGGCAAAGGAGAAGGCTGCCACAGGACAGAAGAAGATGCAGTTGGTGAATATGAGCCATGCCACATGGCGTACGGCCCCTGCCTGCTCCTGGTCTGCCAGCTCCACCCTGCCCAAGCCACAGTACAGCTGGGTGTACACTGCTGCTGTGAACAGGTAGGCCAGAGCGTTGAGCAGCACCAGGGCCACAGTGACCCCCAGTGCAGGGCCCTCACCGCCAGAGAAGGGTAAACAGAGAGGGGAGGCTGAAGGGTCGCTGGTACTGAAGAGGGGCAGGCAGGCTGCT

Function

NR:

description
leucine-rich repeat-containing G-protein coupled receptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613908 True 2071 lncRNA 0.49 1 72341912 72343982

Neighbor

gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 1948 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 9222 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 47015 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 97448 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 134870 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 226835 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 269713 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 288799 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 297769 72641751 ~ 72643688 (+)
frih frih coding downstream 310453 72654435 ~ 72658903 (+)
G542162 NA non-coding upstream 44923 72296744 ~ 72296989 (+)
G542137 NA non-coding upstream 49101 72274316 ~ 72292811 (+)
G542092 NA non-coding upstream 199353 72141516 ~ 72142559 (+)
G542022 NA non-coding upstream 339693 72001916 ~ 72002219 (+)
G542021 NA non-coding upstream 340691 72001016 ~ 72001221 (+)
G542179 NA non-coding downstream 955 72344937 ~ 72345730 (+)
G542180 NA non-coding downstream 2845 72346827 ~ 72347198 (+)
G542181 NA non-coding downstream 3468 72347450 ~ 72348095 (+)
G542183 NA non-coding downstream 6104 72350086 ~ 72350298 (+)
G542184 NA non-coding downstream 7554 72351536 ~ 72352091 (+)
G542100 LOC106587475 other upstream 189518 72151020 ~ 72152394 (+)
G542053 NA other upstream 239438 72101380 ~ 72102474 (+)
G541903 NA other upstream 537450 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1720438 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1787992 70551763 ~ 70558098 (+)
saa saa other downstream 321478 72665460 ~ 72666872 (+)
G542890 NA other downstream 421699 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 694639 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1028823 73190979 ~ 73392251 (+)
G544565 NA other downstream 1943796 74287778 ~ 74288138 (+)

Expression


Co-expression Network