G542179


Basic Information

Item Value
gene id G542179
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72344937 ~ 72345730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613960
GTTCAGGACAGTGTGAGGTCATTTGGATGAATTACTGGGATTCTGACCTGAGTTTGGGGAGGCTCTTCGcagtaaatacatttttcatcTGCAGGTTTCCTGTGAGTTTCAGTTGGTTCAGTGAACTCAGTCCAGTTGTTGGAATGCTGGTCAGCGAGTTTAAGCTCAGGTCTCTAAAACAAACAGGACATATTAGCATACATACATTCCTGGAACACACTACTAGCATATGTACACATTTGTTTAAACAGTAATGTATTTGTTATCATGACTTGTATGAGAACAGATTTAGTTTTTACCACAGTACAGTGTCCTACTCACAGGTTTGTTAGCACCGTCAAATAGAGGAAAGCATCTCTGTGGATGGTTTTCATTTCATTTCTACTCAGGTCCCTGCAGTAAAGAAAATTACTTAATGATGTGTTCAGAATGAGGGCAGCAAATTAAGCATGCTTTTTTAAATTAGCCTCTGGCATGAGCTAGTGAAAGCAGAACTGAGTTCATTTCCAATGAGATCTACTTAGGCCCTTCACCTTTAAGCCTCAAGGTACTATAggctgcaagtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtactcacagcaAGCGCAGGGCAGACAGGCCCTGGAATGTGTCCCTGTCGATTTGCTGGATGTGGTTGTGCTGCAGGCTTCTATAATTAGGGCAGAACACAGAATATACACTCAGGAAAAGGTAGAACGTGGGGGTCATCTTGAGTGTAATGTTTAAAAATGTGTTTGTGCTCTTGCTCACATTCCCAACAATATAT

Function

NR:

description
PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613960 True 794 lncRNA 0.42 1 72344937 72345730
Loading

Neighbor

gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 4973 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 12247 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 50040 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 100473 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 137895 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 225087 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 267965 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 287051 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 296021 72641751 ~ 72643688 (+)
frih frih coding downstream 308705 72654435 ~ 72658903 (+)
G542131 LOC106587483 non-coding upstream 955 72341912 ~ 72343982 (+)
G542162 NA non-coding upstream 47948 72296744 ~ 72296989 (+)
G542137 NA non-coding upstream 52126 72274316 ~ 72292811 (+)
G542092 NA non-coding upstream 202378 72141516 ~ 72142559 (+)
G542022 NA non-coding upstream 342718 72001916 ~ 72002219 (+)
G542180 NA non-coding downstream 1097 72346827 ~ 72347198 (+)
G542181 NA non-coding downstream 1720 72347450 ~ 72348095 (+)
G542183 NA non-coding downstream 4356 72350086 ~ 72350298 (+)
G542184 NA non-coding downstream 5806 72351536 ~ 72352091 (+)
G542186 NA non-coding downstream 8991 72354721 ~ 72355254 (+)
G542100 LOC106587475 other upstream 192543 72151020 ~ 72152394 (+)
G542053 NA other upstream 242463 72101380 ~ 72102474 (+)
G541903 NA other upstream 540475 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1723463 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1791017 70551763 ~ 70558098 (+)
saa saa other downstream 319730 72665460 ~ 72666872 (+)
G542890 NA other downstream 419951 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 692891 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1027075 73190979 ~ 73392251 (+)
G544565 NA other downstream 1942048 74287778 ~ 74288138 (+)

Expression

G542179 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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G542179 Expression in each Bioproject

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G542179 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
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Co-expression Network