G542186



Basic Information


Item Value
gene id G542186
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72354721 ~ 72355254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU613967
gtgtgaatgtctgtgtgtttgattTTGTGTGGGTTGTGCCCGAGCACTCACCAGTACTGGTCTTTGAACCCTTGGCTCAATGTACAGTCACAGAACATACAGGTATTATAtgagtgtttgtctgtgtgtgcgtgttgtaagTGTGTGGAGGACCAATGAGCGGCACACTTACAGGACTTTGAGCTGATGTAGTCCAGACAGAGCGTCAGGGTGGATGAATGAGAGGTCATTTCCTGCCAGTCgtctgaggtagagagagagacaaatagagagagagagagagagaggaagagggaaagaaaAAGGATGGTGATCAATTCAGAATTGCATCGGAAGCTAAACAAGGATTCGTACAGTAATCTATATGTTGTTGGTACAACTTTCAAAGTTCTCAATTTAACAGCTTCACTTTGAAATGTTAATACATACAAGATTGAAAGTCATTGAccaaaaaacaaatgaaaacacCTCACAGGTTCCAGTTTGTGTTATCaggcatagcatagcatagcatagcataacataacataacat

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU613967 True 534 lncRNA 0.41 1 72354721 72355254

Neighbor


gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 14757 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 22031 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 59824 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 110257 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 147679 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 215563 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 258441 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 277527 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 286497 72641751 ~ 72643688 (+)
frih frih coding downstream 299181 72654435 ~ 72658903 (+)
G542184 NA non-coding upstream 2630 72351536 ~ 72352091 (+)
G542183 NA non-coding upstream 4423 72350086 ~ 72350298 (+)
G542181 NA non-coding upstream 6626 72347450 ~ 72348095 (+)
G542180 NA non-coding upstream 7523 72346827 ~ 72347198 (+)
G542179 NA non-coding upstream 8991 72344937 ~ 72345730 (+)
G542187 NA non-coding downstream 323 72355577 ~ 72355845 (+)
G542188 NA non-coding downstream 1058 72356312 ~ 72356652 (+)
G542189 NA non-coding downstream 2269 72357523 ~ 72357919 (+)
G542194 NA non-coding downstream 10292 72365546 ~ 72365752 (+)
G542195 NA non-coding downstream 10621 72365875 ~ 72366193 (+)
G542100 LOC106587475 other upstream 202327 72151020 ~ 72152394 (+)
G542053 NA other upstream 252247 72101380 ~ 72102474 (+)
G541903 NA other upstream 550259 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1733247 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1800801 70551763 ~ 70558098 (+)
saa saa other downstream 310206 72665460 ~ 72666872 (+)
G542890 NA other downstream 410427 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 683367 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1017551 73190979 ~ 73392251 (+)
G544565 NA other downstream 1932524 74287778 ~ 74288138 (+)

Expression



Co-expression Network