G542188


Basic Information

Item Value
gene id G542188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72356312 ~ 72356652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613969
ATCCTTCACATTTCAGGGTGAAGAACCTCCCCACCCATTCCCTTTCTCTCAACAAATTCAGAACACGTCCCCCTAGGCTTTGATGAAGGCAGAAGAATGTGCTAAGCCTTGTTGAGGAAAGACTAAATCCTTCCCTTCTGTAGCACCACTCCCACAACCATTCTATTTCACTAAGAAACTCACTGGTAGACAACATACACTTTAACATCAGAAGGTGAAGAGATTTGGAACACACACTCAGGGAGACAAATGTGTGCAGAGACACAGACAAATACACAAGCACTCAAACACAAATTGAAGGGGATGACTCCCCTACATCTCTTTATCTGTCAGCATGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613969 True 341 lncRNA 0.44 1 72356312 72356652

Neighbor

gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 16348 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 23622 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 61415 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 111848 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 149270 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 214165 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 257043 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 276129 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 285099 72641751 ~ 72643688 (+)
frih frih coding downstream 297783 72654435 ~ 72658903 (+)
G542187 NA non-coding upstream 467 72355577 ~ 72355845 (+)
G542186 NA non-coding upstream 1058 72354721 ~ 72355254 (+)
G542184 NA non-coding upstream 4221 72351536 ~ 72352091 (+)
G542183 NA non-coding upstream 6014 72350086 ~ 72350298 (+)
G542181 NA non-coding upstream 8217 72347450 ~ 72348095 (+)
G542189 NA non-coding downstream 871 72357523 ~ 72357919 (+)
G542194 NA non-coding downstream 8894 72365546 ~ 72365752 (+)
G542195 NA non-coding downstream 9223 72365875 ~ 72366193 (+)
G542196 NA non-coding downstream 10171 72366823 ~ 72367097 (+)
G542197 NA non-coding downstream 10670 72367322 ~ 72367678 (+)
G542100 LOC106587475 other upstream 203918 72151020 ~ 72152394 (+)
G542053 NA other upstream 253838 72101380 ~ 72102474 (+)
G541903 NA other upstream 551850 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1734838 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1802392 70551763 ~ 70558098 (+)
saa saa other downstream 308808 72665460 ~ 72666872 (+)
G542890 NA other downstream 409029 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 681969 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1016153 73190979 ~ 73392251 (+)
G544565 NA other downstream 1931126 74287778 ~ 74288138 (+)

Expression


Co-expression Network