G542194



Basic Information


Item Value
gene id G542194
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72365546 ~ 72365752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU613975
CTTTTGACAACGTCAAGTGAACATTTACTTGAAGAATTGTCAGTGGAAATTGCTAAGTAGTCCCTGTGCATAAAGTTGTATCATTTgtttgcaatcattggtttttgtttgacatacattttaaagtgaaaaatcacTCTGTTGGCGTGGAATTGCTCCAAGGCAACCTGTCAAATACTCTGAGGGCTTGAACTGAATATATCACGT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU613975 True 207 lncRNA 0.37 1 72365546 72365752

Neighbor


gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 25582 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 32856 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 70649 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 121082 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 158504 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 205065 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 247943 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 267029 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 275999 72641751 ~ 72643688 (+)
frih frih coding downstream 288683 72654435 ~ 72658903 (+)
G542189 NA non-coding upstream 7627 72357523 ~ 72357919 (+)
G542188 NA non-coding upstream 8894 72356312 ~ 72356652 (+)
G542187 NA non-coding upstream 9701 72355577 ~ 72355845 (+)
G542186 NA non-coding upstream 10292 72354721 ~ 72355254 (+)
G542184 NA non-coding upstream 13455 72351536 ~ 72352091 (+)
G542195 NA non-coding downstream 123 72365875 ~ 72366193 (+)
G542196 NA non-coding downstream 1071 72366823 ~ 72367097 (+)
G542197 NA non-coding downstream 1570 72367322 ~ 72367678 (+)
G542198 NA non-coding downstream 2130 72367882 ~ 72368587 (+)
G542202 NA non-coding downstream 9521 72375273 ~ 72375600 (+)
G542100 LOC106587475 other upstream 213152 72151020 ~ 72152394 (+)
G542053 NA other upstream 263072 72101380 ~ 72102474 (+)
G541903 NA other upstream 561084 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1744072 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1811626 70551763 ~ 70558098 (+)
saa saa other downstream 299708 72665460 ~ 72666872 (+)
G542890 NA other downstream 399929 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 672869 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1007053 73190979 ~ 73392251 (+)
G544565 NA other downstream 1922026 74287778 ~ 74288138 (+)

Expression



Co-expression Network