G542195



Basic Information


Item Value
gene id G542195
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72365875 ~ 72366193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU613976
ATTTGGGGATGTGTTGGTAATTTACACGCAAGATCACGATGTTTGATAACAGCATACACTACACTGTGTCTTAGTTTACACATTGGTAAATACTACGGTTTCTCTTCATTTTACCTGACACAAAACATCTCTACATTGGCAGTTTATTGGGTCAACTCTAGAGCGTGTGTATTTCTACAATTCTGCTGGATATTAATGAACTCAAGAAGTCAATAAAATGTACTTAGTCCATGTGGTGTAATGTTCAGGTACCTAGGTGGAAATAAATATAAAACCAACCCCTCAGCTTTTATGTTAAGTTAAACAAATAAAGGTGATG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU613976 True 319 lncRNA 0.35 1 72365875 72366193

Neighbor


gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 25911 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 33185 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 70978 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 121411 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 158833 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 204624 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 247502 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 266588 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 275558 72641751 ~ 72643688 (+)
frih frih coding downstream 288242 72654435 ~ 72658903 (+)
G542194 NA non-coding upstream 123 72365546 ~ 72365752 (+)
G542189 NA non-coding upstream 7956 72357523 ~ 72357919 (+)
G542188 NA non-coding upstream 9223 72356312 ~ 72356652 (+)
G542187 NA non-coding upstream 10030 72355577 ~ 72355845 (+)
G542186 NA non-coding upstream 10621 72354721 ~ 72355254 (+)
G542196 NA non-coding downstream 630 72366823 ~ 72367097 (+)
G542197 NA non-coding downstream 1129 72367322 ~ 72367678 (+)
G542198 NA non-coding downstream 1689 72367882 ~ 72368587 (+)
G542202 NA non-coding downstream 9080 72375273 ~ 72375600 (+)
G542250 NA non-coding downstream 82155 72448348 ~ 72455351 (+)
G542100 LOC106587475 other upstream 213481 72151020 ~ 72152394 (+)
G542053 NA other upstream 263401 72101380 ~ 72102474 (+)
G541903 NA other upstream 561413 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1744401 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1811955 70551763 ~ 70558098 (+)
saa saa other downstream 299267 72665460 ~ 72666872 (+)
G542890 NA other downstream 399488 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 672428 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1006612 73190979 ~ 73392251 (+)
G544565 NA other downstream 1921585 74287778 ~ 74288138 (+)

Expression



Co-expression Network