G542198


Basic Information

Item Value
gene id G542198
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72367882 ~ 72368587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU613979
CAGTCGGGACAGTGGTCAGACCTTTCCCAGAGCAATCGGCGCCTCCGTCCTCGTCGCAGCTGCATGAGGACGAACAAATAGCCGGAGTGGATTGTCCTTGACCAGCCGCACCATTCCGTAGTGAAAACAACCGCAAAAATATCCAGATGACAAACACGCGCATGTTCTTCTTCTGTTCAGACGGAGCAAAATGGCTTTACGTGTTTCTCTTATAAGGACATGTAGGCCAATTTTCATGTGACTGCTCTGTTGTGATGGCTTGTCCAAGAAGCTTGAATATGTATTCTTGTTGATAGGTAGTCGACCACTTCAAGGATATAACATGTTAATGCATCAGTCCCACCAAACATATATCCTTAACTACCCCTGTCAAATCTGGGACATTTTCTTTACTCAAACAATGCGGTTTACCTTGCACTAAGTGTCCTCCTATTCATCCCGTGTGGAGTATTGGTCCCATAAAAATAAGTAGCACCCGTCCACACAAACGACAAAATTGGCACCTTTTGCCTTTTCCGTTTTCGTTGTCCCATTAAATCAGAAAACCAGGCGGATCCGTGCGTGGACAAAATAAGAAGCCTCAATACAATTCTCCAACCGAAATGGGAAACACTTGGTGACTTATTTTTGCTATCGTTTCGCTCCTGATTTGTTTCCTGTAGAAAAACACAGTCAGCTTTCAGCCATTCCTCACGTTTCCTTCCTT

Function

NR:

description
PREDICTED: leucine-rich repeat-containing G-protein coupled receptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU613979 True 706 lncRNA 0.45 1 72367882 72368587

Neighbor

gene id symbol gene type direction distance location
mybpc3 LOC106587482 coding upstream 27918 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 35192 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 72985 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 123418 72221348 ~ 72244464 (+)
LOC110526515 LOC106587477 coding upstream 160840 72185072 ~ 72207042 (+)
LOC110526523 LOC106587484 coding downstream 202230 72570817 ~ 72595606 (+)
LOC110526524 LOC106587487 coding downstream 245108 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 264194 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 273164 72641751 ~ 72643688 (+)
frih frih coding downstream 285848 72654435 ~ 72658903 (+)
G542197 NA non-coding upstream 204 72367322 ~ 72367678 (+)
G542196 NA non-coding upstream 785 72366823 ~ 72367097 (+)
G542195 NA non-coding upstream 1689 72365875 ~ 72366193 (+)
G542194 NA non-coding upstream 2130 72365546 ~ 72365752 (+)
G542189 NA non-coding upstream 9963 72357523 ~ 72357919 (+)
G542202 NA non-coding downstream 6686 72375273 ~ 72375600 (+)
G542250 NA non-coding downstream 79761 72448348 ~ 72455351 (+)
G542741 NA non-coding downstream 227157 72595744 ~ 72595981 (+)
G542742 NA non-coding downstream 227786 72596373 ~ 72596662 (+)
G542781 NA non-coding downstream 230568 72599155 ~ 72599398 (+)
G542100 LOC106587475 other upstream 215488 72151020 ~ 72152394 (+)
G542053 NA other upstream 265408 72101380 ~ 72102474 (+)
G541903 NA other upstream 563420 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1746408 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 1813962 70551763 ~ 70558098 (+)
saa saa other downstream 296873 72665460 ~ 72666872 (+)
G542890 NA other downstream 397094 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 670034 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 1004218 73190979 ~ 73392251 (+)
G544565 NA other downstream 1919191 74287778 ~ 74288138 (+)

Expression


Co-expression Network