G542741


Basic Information

Item Value
gene id G542741
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72595744 ~ 72595981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614600
AGTTATCAGACATGCAGTTTTACTGTCAAGTCATGTGAGTGCTGTTGAAATGGAGACTTGTGATGTTTGTTCATTCTGCTTGTAACCCATCTGTATAGGGAAACTCATTCACCTGTGGAACTTTTTTCATTGTTCAATATCAGGCTACACATCATAAACAGacatgtagggctcattaaatattAGGTCATAATGTCGAACAGTGTTAAGAATTCCAACTCACCGAGAGCTGTATTGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU614600 True 238 lncRNA 0.38 1 72595744 72595981

Neighbor

gene id symbol gene type direction distance location
LOC110526523 LOC106587484 coding upstream 138 72570817 ~ 72595606 (+)
mybpc3 LOC106587482 coding upstream 255780 72297993 ~ 72339964 (+)
LOC118965108 NA coding upstream 263054 72332636 ~ 72332690 (+)
LOC100136249 LOC100136249 coding upstream 300847 72287031 ~ 72294897 (+)
LOC110526517 LOC106587478 coding upstream 351280 72221348 ~ 72244464 (+)
LOC110526524 LOC106587487 coding downstream 17714 72613695 ~ 72631381 (+)
LOC110526527 lin7c coding downstream 36800 72632781 ~ 72638350 (+)
LOC110526528 LOC106587490 coding downstream 45770 72641751 ~ 72643688 (+)
frih frih coding downstream 58454 72654435 ~ 72658903 (+)
saa saa coding downstream 69560 72665460 ~ 72666872 (+)
G542250 NA non-coding upstream 140393 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 220144 72375273 ~ 72375600 (+)
G542198 NA non-coding upstream 227157 72367882 ~ 72368587 (+)
G542197 NA non-coding upstream 228066 72367322 ~ 72367678 (+)
G542196 NA non-coding upstream 228647 72366823 ~ 72367097 (+)
G542742 NA non-coding downstream 392 72596373 ~ 72596662 (+)
G542781 NA non-coding downstream 3174 72599155 ~ 72599398 (+)
LOC110526531 LOC106587514 non-coding downstream 112269 72708156 ~ 72815720 (+)
G542860 NA non-coding downstream 120321 72716302 ~ 72721047 (+)
G542891 NA non-coding downstream 170930 72766911 ~ 72767323 (+)
G542100 LOC106587475 other upstream 443350 72151020 ~ 72152394 (+)
G542053 NA other upstream 493270 72101380 ~ 72102474 (+)
G541903 NA other upstream 791282 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 1974270 70615476 ~ 70621510 (+)
LOC110526485 fam92b other upstream 2041824 70551763 ~ 70558098 (+)
G542890 NA other downstream 169700 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 442640 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 776824 73190979 ~ 73392251 (+)
G544565 NA other downstream 1691797 74287778 ~ 74288138 (+)

Expression


Co-expression Network