G542860


Basic Information

Item Value
gene id G542860
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72716302 ~ 72721047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614735
atatgaggagagggaggaggagctgaaaagagggagagtagagagagagatggagggagggaggaaaaagcAGCTATTAATCAGGTGCTGGCAATAATAGCCATCTGAAATGAATGTATTTTTATCCAGTGGTGGTATAACTCTGGTGTGTAATGGGGGAAGGCACAGAGATCAGTTCCTTTCACTATCATACAGACTTAGGGAGTACAGAGACTGGAAGGCAGGATTGGAGAAGATGTGGTTCTGTTTGTTTTTACACAAAAGGCAAAGATGAGACAGAAAGACGGGAAATCAGACTGGTAAATATATAAAGAAAGTGAGACTTGTGATACTAGGGCAATGTTatttgagagagacagaaagtgagaaTAGCATGGATGGGAAGCAGGGCATTGAATGGTGTTTTGCCTGGGTCAGACATTGTCCCACACAGCCTCAGTAAACCGTCACATTGATTAACCAAGACGGAGCCTGACTTGGATTGAAGGGAATTTAGATtcaagagggaaggagagaggtatgcgtgtgtgtttgtgcgtgcgtgtaaGTGGGTAAATTAGGATGGGCGTATGCTTACACACGTGTCTCTACTATTACATAACACTCTCTGGTTCACTAGAGACAGTGTCTCTACTTTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTGCATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTTTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTGCATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGTCTCTACTGTTGCATAACACTCTCTGGTTCACTAGAGACGGTGTCTCTACTGTTGCATAACACTCTCTGGTTCACTAGAGACGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGTCTCTACTTTTACATAACACTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACTCTCTGGTTCACTAGAGACGGTGTCTCTACTATTACATAACACTCTGGTTCACTAGAGACGGTGTCTCTACTATCACATAACACTCTGGTTCACTAGAGACGGTGTCTCTACTTTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACTCTCTGGTTCACTAGAGACGGTGTCTCTACTTTTACATAACACTCTGGTTCACTAGAGACGGTGGTTTCTACTTTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTTTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTGCATAACACTCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGtctctactgttgcatagcactCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTTTCTACTTTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCT
>TU614736
GTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTGGTTCACTAGAGACGGTGGTGtctctactgttgcatagcactCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGATGGTGtctctactgttgcatagcactCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTGGTTCACTAGAGACGGTGGTGtctctactgttgcatagcactCTGGTTCACTAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTTTCTACTTTTACATAACACTCTGGTTCACTAGAGACGATGGTGTCTCTACTGTTACATAACACTCTGGTTCACTAGAGACGGTGGTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614735 False 2328 lncRNA 0.44 4 72716302 72721047
TU614736 True 551 lncRNA 0.46 2 72718845 72721047

Neighbor

gene id symbol gene type direction distance location
LOC110526530 LOC106587515 coding upstream 14059 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 25645 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 43624 72667865 ~ 72672678 (+)
saa saa coding upstream 49592 72665460 ~ 72666872 (+)
frih frih coding upstream 57399 72654435 ~ 72658903 (+)
LOC110526532 LOC106562322 coding downstream 105550 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 110937 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 163430 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 268959 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 290670 73011717 ~ 73013424 (+)
G542781 NA non-coding upstream 116904 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 119640 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 120321 72595744 ~ 72595981 (+)
G542250 NA non-coding upstream 260951 72448348 ~ 72455351 (+)
G542202 NA non-coding upstream 340702 72375273 ~ 72375600 (+)
G542891 NA non-coding downstream 45864 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 57988 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 72171 72793218 ~ 72793696 (+)
G542901 NA non-coding downstream 82761 72803808 ~ 72804185 (+)
G542902 NA non-coding downstream 84356 72805403 ~ 72805604 (+)
G542100 LOC106587475 other upstream 563908 72151020 ~ 72152394 (+)
G542053 NA other upstream 613828 72101380 ~ 72102474 (+)
G541903 NA other upstream 911840 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2094828 70615476 ~ 70621510 (+)
G542890 NA other downstream 44634 72765681 ~ 72766851 (+)
LOC110526543 LOC106587517 other downstream 317574 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 651758 73190979 ~ 73392251 (+)
G544565 NA other downstream 1566731 74287778 ~ 74288138 (+)
G545485 NA other downstream 2516753 75237800 ~ 75238164 (+)

Expression


Co-expression Network