G542890


Basic Information

Item Value
gene id G542890
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72765681 ~ 72766851 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614766
ccttgagacgtttctacaacttgattttagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacacctgtctatataaggtcccatagttgacagtgcatgtcagagcaaaaaccaagccatgaggtctctgagacaggattgtgtcgaggcacagatctgggaaagggtaccacaacaacattgaaggtccccaagaacacagcggcctccatcattattaaaagatataagtttggaaccaccaaaacgcttcctagagctggccgcctggccaaactgagcaatcgggggagaagggccttggtcagggaggtggccaagaagccgatagtcactctgacagagctccagagtttctctttggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggcctttatggtagagtggccagacggaagccactcctcaggaaaaggcacatgacaccccacttggagtttgtcaaaaggcacctaaaggaccatgacaaacaagattctcaggtttgatgaaaccaagattgaactctttggcctgaatgccaaccatcacatctggaggaaacctggcaccatccctacaatgaagcatggtggtggcagcatcatgctgttgggatgatTTTCAGCTGGAGAGtctgggaggctagtcaggatcaaggaaatgatgaacggagcaaagtacagagatccttgatgaaaacctgctccagagcgctcgggacctcaaactggggtcgaaggttcaccttccaacagaacaacaaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatatccatTAGTGGCCAAGGCATAGTCCagacccgatcaaacatctctggggagacctgaataatgctgtgcagcaatgctccccatccaacctgacagagattgagagaatctgcagagaagaatgagagagcGTTGGACTACTAACCGAGTGTTGGActactaaccgaaaggttgcaagatcaactccccgagctgacaaggtcaaaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggtgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataa

Function

NR:

description
Putative transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614766 True 1171 TUCP 0.48 1 72765681 72766851

Neighbor

gene id symbol gene type direction distance location
LOC110526530 LOC106587515 coding upstream 63438 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 75024 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 93003 72667865 ~ 72672678 (+)
saa saa coding upstream 98971 72665460 ~ 72666872 (+)
frih frih coding upstream 106778 72654435 ~ 72658903 (+)
LOC110526532 LOC106562322 coding downstream 59746 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 65133 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 117626 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 223155 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 244866 73011717 ~ 73013424 (+)
LOC110526531 LOC106587514 non-coding upstream 3790 72708156 ~ 72815720 (+)
G542860 NA non-coding upstream 44634 72716302 ~ 72721047 (+)
G542781 NA non-coding upstream 166283 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 169019 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 169700 72595744 ~ 72595981 (+)
G542891 NA non-coding downstream 60 72766911 ~ 72767323 (+)
G542894 NA non-coding downstream 12184 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 26367 72793218 ~ 72793696 (+)
G542901 NA non-coding downstream 36957 72803808 ~ 72804185 (+)
G542902 NA non-coding downstream 38552 72805403 ~ 72805604 (+)
G542100 LOC106587475 other upstream 613287 72151020 ~ 72152394 (+)
G542053 NA other upstream 663207 72101380 ~ 72102474 (+)
G541903 NA other upstream 961219 71800040 ~ 71804462 (+)
cmc2 cmc2 other upstream 2144207 70615476 ~ 70621510 (+)
LOC110526543 LOC106587517 other downstream 271770 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 605954 73190979 ~ 73392251 (+)
G544565 NA other downstream 1520927 74287778 ~ 74288138 (+)
G545485 NA other downstream 2470949 75237800 ~ 75238164 (+)
G545601 NA other downstream 2655010 75421861 ~ 75422752 (+)

Expression


Co-expression Network