G542891


Basic Information

Item Value
gene id G542891
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72766911 ~ 72767323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614767
gagtaaagggtctgaatacttattttgtcattatggggtattgtgtgtagattgatgagggggatttgttttaaatccattttagaataaggctgtaatgtaacaaaatgtgaaaaaagtcaagtggtctgaatactttctgaatgcactgtatttctttgccttgacagtcatttctgaagaagattatttatttaatgtgattagtgattcatttacgtctgtccctcattttagggtcaaccctgttacgtgaactgatCTCTCGTTTTAAAATGGTGAAACTATTCCGGTTTTAGATATTGTTTTCAAAAGAGACATTGAACATCTAAAAGTCAAATCATAGAGGCAGGTGAGcaggttctactctttttggtcattttctggtgttttgtggtggaaaactacATGTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614767 True 413 lncRNA 0.35 1 72766911 72767323

Neighbor

gene id symbol gene type direction distance location
LOC110526530 LOC106587515 coding upstream 64668 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 76254 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 94233 72667865 ~ 72672678 (+)
saa saa coding upstream 100201 72665460 ~ 72666872 (+)
frih frih coding upstream 108008 72654435 ~ 72658903 (+)
LOC110526532 LOC106562322 coding downstream 59274 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 64661 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 117154 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 222683 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 244394 73011717 ~ 73013424 (+)
LOC110526531 LOC106587514 non-coding upstream 5020 72708156 ~ 72815720 (+)
G542860 NA non-coding upstream 45864 72716302 ~ 72721047 (+)
G542781 NA non-coding upstream 167513 72599155 ~ 72599398 (+)
G542742 NA non-coding upstream 170249 72596373 ~ 72596662 (+)
G542741 NA non-coding upstream 170930 72595744 ~ 72595981 (+)
G542894 NA non-coding downstream 11712 72779035 ~ 72780214 (+)
G542898 NA non-coding downstream 25895 72793218 ~ 72793696 (+)
G542901 NA non-coding downstream 36485 72803808 ~ 72804185 (+)
G542902 NA non-coding downstream 38080 72805403 ~ 72805604 (+)
G542905 NA non-coding downstream 52601 72819924 ~ 72820971 (+)
G542890 NA other upstream 60 72765681 ~ 72766851 (+)
G542100 LOC106587475 other upstream 614517 72151020 ~ 72152394 (+)
G542053 NA other upstream 664437 72101380 ~ 72102474 (+)
G541903 NA other upstream 962449 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 271298 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 605482 73190979 ~ 73392251 (+)
G544565 NA other downstream 1520455 74287778 ~ 74288138 (+)
G545485 NA other downstream 2470477 75237800 ~ 75238164 (+)
G545601 NA other downstream 2654538 75421861 ~ 75422752 (+)

Expression


Co-expression Network