G542898


Basic Information

Item Value
gene id G542898
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72793218 ~ 72793696 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614776
ACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTTTATCTAATGCCATCTAACTCCATCAACTGTATCTAATGCCATCTAACTCCATTAACTGTATCTAATGCCATCTAACTTCATTAACTGTATCTAATGCCATCTAACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTTACTTCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTCTATCTAATGCCATCTAACTTCATTAACTCCATCTAACTCCATTAACTGTATCTAATGCCATCTAACTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614776 True 344 lncRNA 0.33 2 72793218 72793696

Neighbor

gene id symbol gene type direction distance location
LOC110526530 LOC106587515 coding upstream 90975 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 102561 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 120540 72667865 ~ 72672678 (+)
saa saa coding upstream 126508 72665460 ~ 72666872 (+)
frih frih coding upstream 134315 72654435 ~ 72658903 (+)
LOC110526532 LOC106562322 coding downstream 32901 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 38288 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 90781 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 196310 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 218021 73011717 ~ 73013424 (+)
G542894 NA non-coding upstream 13004 72779035 ~ 72780214 (+)
G542891 NA non-coding upstream 25895 72766911 ~ 72767323 (+)
LOC110526531 LOC106587514 non-coding upstream 31327 72708156 ~ 72815720 (+)
G542860 NA non-coding upstream 72171 72716302 ~ 72721047 (+)
G542781 NA non-coding upstream 193820 72599155 ~ 72599398 (+)
G542901 NA non-coding downstream 10112 72803808 ~ 72804185 (+)
G542902 NA non-coding downstream 11707 72805403 ~ 72805604 (+)
G542905 NA non-coding downstream 26228 72819924 ~ 72820971 (+)
G542843 sdhaf2 non-coding downstream 29540 72823236 ~ 72826432 (+)
G542906 NA non-coding downstream 38808 72832504 ~ 72832731 (+)
G542890 NA other upstream 26367 72765681 ~ 72766851 (+)
G542100 LOC106587475 other upstream 640824 72151020 ~ 72152394 (+)
G542053 NA other upstream 690744 72101380 ~ 72102474 (+)
G541903 NA other upstream 988756 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 244925 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 579109 73190979 ~ 73392251 (+)
G544565 NA other downstream 1494082 74287778 ~ 74288138 (+)
G545485 NA other downstream 2444104 75237800 ~ 75238164 (+)
G545601 NA other downstream 2628165 75421861 ~ 75422752 (+)

Expression


Co-expression Network