G543223


Basic Information

Item Value
gene id G543223
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72809049 ~ 72809637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615143
CAGAGGTGCCTCCAATGTCCATGGCTTTCAGGTTGCGGGCTTTGATGATGGTCACAGTGATGGTGTTGGCTTGAGGGTTGTAGCACAGTGACACCAGCAGGTCTCCTCGACTCCCCTgagaaacacaatgacatcaccactcaccaaccctctctcccttcatctcctctaCCCCCTTCTGTCTTCCCATCATCCCTCCTTCtccttgttccctctctcctacccttcCCCCTCATCCCCTGTCCCTCTGCAACTGTcctagtctgtgtgtgtactttactcaCGCTGCCGTCGCTGCAGGGCTTCAGCTCCTTCCAGTAGGTCTGCTGGTTGCCCAGGTCCACCTTGTTAAGGGGAATGGACACCTCCCCGATGGGGTCGTTCCTGCTGAAGCGATCGTAATCCAGCACCTGCATATAGAGGGTCCTCTGGATCACCTTCTCATAGGGGAACCCTGGGGGGAACAGACAGATACATAAACAGACAGATAAGAGGCTGATATGTGCTGGACAGAGATTTAGGGAGTACTCTTTCAGACTTTATACAGGATAACCAATAGCCATTTGTCTAGTTATGTGTATAGTTCTAA

Function

NR:

description
synaptotagmin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615143 True 589 lncRNA 0.52 1 72809049 72809637

Neighbor

gene id symbol gene type direction distance location
LOC110526964 LOC106587485 coding downstream 279673 72504884 ~ 72529376 (-)
LOC110526521 LOC106587483 coding downstream 440374 72341021 ~ 72368675 (-)
LOC110526519 s39ad coding downstream 541317 72256687 ~ 72267732 (-)
LOC110526518 LOC106587479 coding downstream 557637 72244467 ~ 72251412 (-)
LOC110526513 LOC106587475 coding downstream 654613 72151010 ~ 72154436 (-)
LOC110526534 sdhaf2 coding upstream 13601 72823238 ~ 72826687 (-)
rpb10 NA coding upstream 20844 72830481 ~ 72831878 (-)
LOC110526535 NA coding upstream 23633 72833270 ~ 72837247 (-)
LOC110526538 LOC106587508 coding upstream 97937 72907574 ~ 72933603 (-)
LOC110526540 LOC106587507 coding upstream 192508 73002145 ~ 73007919 (-)
G543222 LOC106587514 non-coding downstream 13 72808389 ~ 72809036 (-)
G543221 NA non-coding downstream 3758 72805069 ~ 72805291 (-)
G543220 NA non-coding downstream 4097 72804730 ~ 72804952 (-)
G543201 NA non-coding downstream 32088 72776514 ~ 72776961 (-)
G543196 NA non-coding downstream 41849 72766911 ~ 72767200 (-)
G543225 NA non-coding upstream 1266 72810903 ~ 72815653 (-)
G543219 NA non-coding upstream 10197 72819834 ~ 72821473 (-)
G543251 ext2 non-coding upstream 74780 72884417 ~ 72885653 (-)
G543240 NA non-coding upstream 77754 72887391 ~ 72887933 (-)
G543091 NA other downstream 87231 72600275 ~ 72721818 (-)
G543092 NA other downstream 142336 72659456 ~ 72666713 (-)
G541798 NA other downstream 1195209 71609531 ~ 71613840 (-)
LOC110526488 LOC106562298 other downstream 2143188 70623828 ~ 70666213 (-)
G540376 NA other downstream 2701874 70103798 ~ 70107175 (-)
G543224 LOC106587514 other upstream 140 72809777 ~ 72810172 (-)
G543313 LOC106587506 other upstream 187891 72997528 ~ 73020000 (-)
G543334 NA other upstream 219136 73028773 ~ 73029102 (-)
G543823 NA other upstream 752722 73562359 ~ 73562863 (-)

Expression


Co-expression Network