G543225


Basic Information

Item Value
gene id G543225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72810903 ~ 72815653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615146
gttGATATATAAGATTGTGCACCCCACAGATGTGTGACtaaagagagaacagaagagagcaaGAGATGGGACAAAGGGATGTCAAGGACATACAGATATCAACATCCCCAATGAAAACTTTTTACATACACAATTTTAATTAATCCTTTATACAATGTCACAAAATCCTGACCTATTTTGGACAATCCTCCTCGTATCTCCACCAATATCTGTGTAGAGAGCACTAATCAGACATTTAGGGTGATTTCAATCTGAGTGACCACTGATCAGTTTTCATATTTATTTAGATCTGTGTTTTGAATTGCTACTGGGGTTTTCTAGGGCCAAGGAAGGACTCTACTAAGATTCCAAGCTCAATGCCTCAGGCAAATGGACCATACCTGGCTTCTGGACCTATTTTCAGTTCAGGGAAATCAAGTAAAACAAATAATTAATTTTCACCTGTATCATGCCATTTTATCTGTGTTTCCTATTCTAGCTGATCTTTTCAATTTAATGCTGCGTCTGCATACATAATGATGTATCGTTTGCTTGTGTGCTCAGTATGAGGCAGGGCGGTGACTCTGTTCCCAGTTATTTTAGGAGCAGGTAGGTGCTCTGCTATGTTCTGCTCTGCCTGGAGATTGCAGTGATGCAAATGAGGTGATGATCATTGTCTGTCTCACCTTTTCTCTGTGACACTTGGGGAGTGAGAGCatatggaggagagggggaggggtgttgTTTAAGAGCACCTTGTGCCAAAAAGCATGTGTGTCACAGTGGGGTTTTGAAGTACGTCAGCACTGACGTATGGAGACCTCGTCTGTCTTAGTCTCAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACCGCGTATTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAAACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGTGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGAGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACGTAGAGGGAAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGTGTGTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGGGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAACATTTTGGGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCGTGTTGTGCCAGACCTAGAGGGGAGGGACAGCGTGTTGGGCCAGACCTAGAGCGGAGGGACAACGTTTTGGGCCAGACCTAGAGCGGAGGGACAGTGTGTTGGGCCAGACCTAGAGCGGAGGGACAGCATGTTGTGGTTCTGTAAGCCACCTATTAAATGGTAAACCAGAACACAAGGCCCCTGATGCACACAGGCCTGAGTGAACGGTCCCTCTGCCCAACAGAAGAGGGCTAGAATAGAATATGCTGTATGTGGTATTGTCAGATGTAAtgagctcccctctctctcttctctttgtttctctcttcaCTCAGATTCTCGAATGTCTATGGCCCCCTCCCCAACCAACCCATAAAACCCCAACAAATAGAAAGTAGACACATGCCCTTTGTCACGTTCCAACATCCCAGTAATCATTAGCGTCTCCTCCTTAGCGATCAGCGACAACATGAATAATTAACTGAACATCTAAATTACTTTATACAGAATAAAAACAGCCAAAAAACAGATTCCATATTAAGAAAATGAAAATGGCAAAAGTGAACACcaagcacacatacatacacggtaaacacaaacagtcagatgttgacacactcatacacacattgcaaacacacacacacacacacacacacattcagtaaACACAAATAAACAGTCAAATGTAAACAGAAAATAGGTTTAGTTGATATTATTACTCTTGTAGCTATCCTTCAGCCCACTGTGTGATGAGAGAGAAACTTAATCTTGGAACAGGTCACTCCAGGATGACATCAGGAGCAGCACAGAGCAGAGGGGGTCTGGCCAGTAATGGAACAGCCTGGTCCTGaagcaggacagaacaggacagaggggGTTTGGTCCGTAACAGCTGTGGTCCTGAAGACCCACTAACACCCAACTATCTAACATTaggagcaggacagaacagagggggTTTGGTCTGTAACAGCCGTGGTCCTGAAGACCCATTAACACCCAACTATCTAACATcaggagcaggacagagcagagggggTTTGGTCTGTAATGAAACAGCCCTGGTCCTGAAGACCCACTAAGACCCTAACTATCTAACATctggagcaggacagagcagagggggTTTGGCCAGTAATGGAACAGCCTTCCACTAAGACCCTAAACATTTATCTACTAACATTCTTATAACAATGTGTTCTGTGACATGCACACTAATGAATAAGATGTTGACTAAATGACTTACAGACCAACTGACGTTACAGACACACGTTCCAACAGACAGGCAGAATTACACAAAATGACTGAGAGAGACAAACAGGTAACGTTACCAACCTTGATGGGGACAAGATCAATTGGCTTAGTGCTCCATTAGAAACAAAACTGACTCGGTTGGGAGAGGGGCATTTATTTATGGTTATCTGCAGTGGATGATGCAATTGAGAGAAAGCAGCTCAGATGAAGACTGGTGGTTCATGTCAAGTTCCTCCTCTGCTTACCATTCCACACCAGGTAGCAGGCACCACCCTACAGactgtacccctctctctctgtcactgcttAGCTGCTGTGACCTCTCCAAGTCTTCAAACATATCCAGTAGAATACTGATGATTATTATTGTCATCATTATTATCAGTAACATTGTCGTTATTCATTTGATAGCAGTGCAAGCCCAATACTTTCACACACTTGCACTCGCATTCACACTCTAACTTTCgctgacacgcacgcacgcacgcacacacacacacacacgcacacacacacacacacacacacacagagaatacgaCAGAATAATAGCTGTCTTTTTGCTTCTATTTACTGTCTCTGGAAGAACATTTTGATTGGTCTCTTTAGGCTttttaaaaacaaaacacaacattGATGACTTTACTCTTTTTCTGTCATtaatcttttttttctctccagaaaATAGGAACGTCTTTTTACATTTCCCCCATGGACCAGTGTAAATGATCAGTCATTTTCTCCTTTTTTCATCTAGAAATTCATTTGGAGTTACAGCACATCACCCACAGCACGCACAGACAACAAGGGGGTCCAGCCAGGGAAGACTCACCACAgtggtgggagagaaagagatcagaGATGATGAACGGGGTGGAGTGACAGTGTCACGTCTAATTCCATTATCATCCAGACAGTCCATCCCTCTTCTATACCATTGGTTTGCAACTCTCTCTCTATCGATCCTTCCTGTTATATTCTCTGTGTGTTTGCAGAAGGGAATGGACCAAAGGGTCAACGTgggaagcaaaaaaaaaaaaatgaacagcCAACCAGATTGCTTCTGACGACAGAGAGAGCAGTGATTAGGGAGAGAAGTAGCCTCCCCTCACTGACACAGGAGAACGATGGAGAGACACAGGATTAATGGTGGAACTGGATTCCTTGTCGGTCAGTCTGTCACACAGTCACAGATTTAATGTTTCCTGAAAGACAGGCCCTTCACCAGCTCCTTACGCAGGATTCTTATATGGTCTATtttaacctgtttttgttggtggCTGAGGCTCACCCTAGGGCTGGCAGAGTGTGCTGCTCCAGAGTAAAACAGAGTAAAGGTGGACCAAGGAGAAAAAACTATGGTTGAGAGGAAGGTATGACTTAAAAGCAACAAGACTCAGAAAGGACCCGGCTAaacagagaggagtagaggaaggAGAAGCTCATTAGGGATCTGAGAGAGGACAGGCATGAGGAGAGGGTGGATGCGTAGGGTGGATGCGTTGGATGGCTATTTGTACCCATGTTCTGCAGCGAGTCAGCCTTGTGCATAACGATAGGGTGGGAGGGCAGGGCAGGGGGCTGGGATGGTCTGGGTGGATGTGACTGGACCTACAGTATCAGGCCTTGAGGGCATGCCACTGCTGCACGGCATTACGAGGTTTACCCATCATGTCCTTCCAGTGCTTCACCTCCGCTGGACCACTCTTCCAC

Function

NR:

description
synaptotagmin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615146 True 4723 lncRNA 0.49 2 72810903 72815653

Neighbor

gene id symbol gene type direction distance location
LOC110526964 LOC106587485 coding downstream 281527 72504884 ~ 72529376 (-)
LOC110526521 LOC106587483 coding downstream 442228 72341021 ~ 72368675 (-)
LOC110526519 s39ad coding downstream 543171 72256687 ~ 72267732 (-)
LOC110526518 LOC106587479 coding downstream 559491 72244467 ~ 72251412 (-)
LOC110526513 LOC106587475 coding downstream 656467 72151010 ~ 72154436 (-)
LOC110526534 sdhaf2 coding upstream 7585 72823238 ~ 72826687 (-)
rpb10 NA coding upstream 14828 72830481 ~ 72831878 (-)
LOC110526535 NA coding upstream 17617 72833270 ~ 72837247 (-)
LOC110526538 LOC106587508 coding upstream 91921 72907574 ~ 72933603 (-)
LOC110526540 LOC106587507 coding upstream 186492 73002145 ~ 73007919 (-)
G543223 NA non-coding downstream 1266 72809049 ~ 72809637 (-)
G543222 LOC106587514 non-coding downstream 1867 72808389 ~ 72809036 (-)
G543221 NA non-coding downstream 5612 72805069 ~ 72805291 (-)
G543220 NA non-coding downstream 5951 72804730 ~ 72804952 (-)
G543201 NA non-coding downstream 33942 72776514 ~ 72776961 (-)
G543219 NA non-coding upstream 4181 72819834 ~ 72821473 (-)
G543251 ext2 non-coding upstream 68764 72884417 ~ 72885653 (-)
G543240 NA non-coding upstream 71738 72887391 ~ 72887933 (-)
G543238 ext2 non-coding upstream 72862 72888515 ~ 72894947 (-)
G543224 LOC106587514 other downstream 731 72809777 ~ 72810172 (-)
G543091 NA other downstream 89085 72600275 ~ 72721818 (-)
G543092 NA other downstream 144190 72659456 ~ 72666713 (-)
G541798 NA other downstream 1197063 71609531 ~ 71613840 (-)
LOC110526488 LOC106562298 other downstream 2145042 70623828 ~ 70666213 (-)
G543313 LOC106587506 other upstream 181875 72997528 ~ 73020000 (-)
G543334 NA other upstream 213120 73028773 ~ 73029102 (-)
G543823 NA other upstream 746706 73562359 ~ 73562863 (-)
sinhcafl fa60a other upstream 1453590 74269202 ~ 74274416 (-)

Expression


Co-expression Network