G542843 (sdhaf2)


Basic Information

Item Value
gene id G542843
gene name sdhaf2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72823236 ~ 72826432 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614714
ggaacatttctgggatcttttatttcagctcatgaaaccaacactttacatgttgcgtttatatttttgttcagtatagttaactCACACATCCGTGTACTACAGTCATTATTTTCATTTTGTGTTGAAGGTCTTATGAATAAGGCCGGTGATGCATGTGCATGTAGCTGTAGGAATTATCCTTGTCAAGGAGGTACATTTCTCTGATAAATTGAGATCATTAGCATTCTCTGAGGGTGTTTTCACACTTGGTCCttttcagaaaaaaatgtgtcGCTTACTTTTTAGTGCAGTCTGATTGTCTGAAACCCCCCAAAGGAACTCAGACCACTCATAGAGCCCCCGAAGCAAACTTAGACCATTTCGAGAGGTAGTCTGAGTTCGGTTCGAATGAATTCCACGGTCCGGCTCCCTTTTTAAGGCTATGTGAACATAAAGCTCCCCAGATTCGCTTGTCATTATTCCCGCACCACACACTAGACTGCAGCAACACCGTTTTCCCTGCAATTGCCCCTCGCATTGGTGCCACAAATTAGATAAATTAGGGGGGGGGCATGTGCTATTTAAGGATATTGATTAGCGATTGTCAAGGATGCACAGAAATGCCATAATATGCGTTTAGTTTttagttcagattttttttttttgcaatatgTGACCTATATGCTAAGAGCTTCTTACGCTGTTTATTCGAATGTGGGGTTTGAATAGTGTGAGGAGACGATAACATAATTTGGTAAAAATCACAACATAGGGTTGAAAATCAATTCTacctcttaaaggggcagtggcCTACAATGGGTGTAAAATGTTCTACAGCATTATCTTATCGGCAGTAATTATTCTGCAATTTAGTATGTTACCaataatatttacatgttaatagTATCTTCTAATTATTGTCTCATTTTTAACAAAATGCAATCTATTAGCTTCCAAAATATAAGTAGGTATATGGTGTATCTAGCTGTCCGATAGCATATTCTGATGGAATGGCTTGTCCTGCACTTTGTAAAAACCCACAGTGCATTGAATGAATGTTGGAAAAAGATATTGGTTCCTTTCTAAACATAGTAATGTGAATGCAAAGAGGACTCAGACAACAAAATAGGTGAAGTGAACTGGCACAGGAGTTAAGTCCTCGTTCAAAGGTAAGGGCAGTGTGAATACAAAGAGAACAGATcttttgcttatttttttaccctcagagttcactttaaagaggactgagatcagTTATTTTAAAGAAGACTATAATGTGAAAACACCCTGAGAGGGATGTGTCAGCCAGGCTTCACTGGCTCCCCTTGTCCAGGTATTCCAGGTTGGGTGCATCCAGCCTTTGTTCCTGATCTTTGTTCTTTGTGAACTCCTTGAGTAGATCCATGATTTCACCTGCGTACACATCAGGTACAGGCTGGGCCTCTGTTGCCCAGTAGTAGATGTCCCAGTCGTTGCTAGGCTCGTTGATCAGTCTGTCATACTGTCTTAACTGGGGCTCGTTCATTGTATTAAGATATTGTTTGGCAAACAGGCTGAGCAATATGCAATTCTCCAGCATGCCCCTCTTTCGGCTTTGGAAGAGCAGGCGCCGTCTCTTGATGTCCATGGTCTCACCATCCTTCTCTGTCCAGGGGGGCAGGGGGATCTCAATTATGTCACCCCTAGAGTCATCAGGTGCCTCTCCTTTGTAACCCCGTGTAGTTACTAGTTCTACCACAGCTGGTCTCAATGACTCCTGGCATACCCCACTTACCAGTCTTTTAGCAACGAGAACAGACAGCATTGTGTCTTTCTTCCTTGTGACTGCTGAATCCTGATGTAACTGTTCTTGTTGACTCGAGAGTAACCAGTGTCCTAAAATTATACAAGTCCCTGCTAGCCAAAGACAGTCACATAATTACAAGGGGAGCACAGCAAGAAATGTCCGCTCTAGCTTAGGGAAATAATTGGCGCCATATTGGTAAGGGCAATTATTACTTATTCCAAATTATTCTTGAAATGCATGTTAAACA

Function

symbol description
sdhaf2 Predicted to be involved in aerobic respiration; mitochondrial respiratory chain complex II assembly; and protein-FAD linkage. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SDHAF2 (succinate dehydrogenase complex assembly factor 2).

NR:

description
succinate dehydrogenase assembly factor 2, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614714 True 2015 lncRNA 0.41 4 72823236 72826432

Neighbor

gene id symbol gene type direction distance location
LOC110526531 LOC106587514 coding upstream 7516 72708156 ~ 72815720 (+)
LOC110526530 LOC106587515 coding upstream 120993 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 132579 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 150558 72667865 ~ 72672678 (+)
saa saa coding upstream 156526 72665460 ~ 72666872 (+)
LOC110526532 LOC106562322 coding downstream 165 72826597 ~ 72830480 (+)
LOC110526536 LOC106562320 coding downstream 5552 72831984 ~ 72884038 (+)
LOC110526537 ext2 coding downstream 58045 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 163574 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 185285 73011717 ~ 73013424 (+)
G542905 NA non-coding upstream 2265 72819924 ~ 72820971 (+)
G542902 NA non-coding upstream 17632 72805403 ~ 72805604 (+)
G542901 NA non-coding upstream 19051 72803808 ~ 72804185 (+)
G542898 NA non-coding upstream 29540 72793218 ~ 72793696 (+)
G542894 NA non-coding upstream 43022 72779035 ~ 72780214 (+)
G542906 NA non-coding downstream 6072 72832504 ~ 72832731 (+)
G542916 NA non-coding downstream 25216 72851648 ~ 72852100 (+)
G542994 NA non-coding downstream 160824 72987256 ~ 72987462 (+)
G543009 NA non-coding downstream 201768 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 205095 73031527 ~ 73031864 (+)
G542890 NA other upstream 56385 72765681 ~ 72766851 (+)
G542100 LOC106587475 other upstream 670842 72151020 ~ 72152394 (+)
G542053 NA other upstream 720762 72101380 ~ 72102474 (+)
G541903 NA other upstream 1018774 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 212189 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 546373 73190979 ~ 73392251 (+)
G544565 NA other downstream 1461346 74287778 ~ 74288138 (+)
G545485 NA other downstream 2411368 75237800 ~ 75238164 (+)
G545601 NA other downstream 2595429 75421861 ~ 75422752 (+)

Expression


Co-expression Network