G542906


Basic Information

Item Value
gene id G542906
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72832504 ~ 72832731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614785
TAGAAATGTTGTAATTGAATGAGCTGCGCCTCATTCATAGCTCCATTTaaatttatactgttacattgatgctgttgacccggattactggttgctgcggaaaaaggaggaaggtcaaaaggggggtgagtgtaatggatgtgaaacggctagcttagttagcgtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614785 True 228 lncRNA 0.44 1 72832504 72832731

Neighbor

gene id symbol gene type direction distance location
LOC110526532 LOC106562322 coding upstream 2024 72826597 ~ 72830480 (+)
LOC110526531 LOC106587514 coding upstream 16784 72708156 ~ 72815720 (+)
LOC110526530 LOC106587515 coding upstream 130261 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 141847 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 159826 72667865 ~ 72672678 (+)
LOC110526537 ext2 coding downstream 51746 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 157275 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 178986 73011717 ~ 73013424 (+)
LOC110526541 rps13 coding downstream 183482 73016213 ~ 73020001 (+)
LOC118965112 NA coding downstream 184677 73017408 ~ 73017539 (+)
G542843 sdhaf2 non-coding upstream 6072 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 11533 72819924 ~ 72820971 (+)
G542902 NA non-coding upstream 26900 72805403 ~ 72805604 (+)
G542901 NA non-coding upstream 28319 72803808 ~ 72804185 (+)
G542898 NA non-coding upstream 38808 72793218 ~ 72793696 (+)
G542916 NA non-coding downstream 18917 72851648 ~ 72852100 (+)
G542994 NA non-coding downstream 154525 72987256 ~ 72987462 (+)
G543009 NA non-coding downstream 195469 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 198796 73031527 ~ 73031864 (+)
G543013 NA non-coding downstream 199385 73032116 ~ 73032334 (+)
G542890 NA other upstream 65653 72765681 ~ 72766851 (+)
saa saa other upstream 165632 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 680110 72151020 ~ 72152394 (+)
G542053 NA other upstream 730030 72101380 ~ 72102474 (+)
G541903 NA other upstream 1028042 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 205890 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 540074 73190979 ~ 73392251 (+)
G544565 NA other downstream 1455047 74287778 ~ 74288138 (+)
G545485 NA other downstream 2405069 75237800 ~ 75238164 (+)
G545601 NA other downstream 2589130 75421861 ~ 75422752 (+)

Expression


Co-expression Network