G542916


Basic Information

Item Value
gene id G542916
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72851648 ~ 72852100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614795
cgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgcagtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614795 True 415 lncRNA 0.45 2 72851648 72852100

Neighbor

gene id symbol gene type direction distance location
LOC110526532 LOC106562322 coding upstream 21168 72826597 ~ 72830480 (+)
LOC110526531 LOC106587514 coding upstream 35928 72708156 ~ 72815720 (+)
LOC110526530 LOC106587515 coding upstream 149405 72691788 ~ 72702243 (+)
LOC118964931 saa coding upstream 160991 72689343 ~ 72690657 (+)
LOC110518525 LOC106587448 coding upstream 178970 72667865 ~ 72672678 (+)
LOC110526537 ext2 coding downstream 32377 72884477 ~ 72907006 (+)
LOC110526539 LOC106587506 coding downstream 137906 72990006 ~ 73001543 (+)
LOC110525049 LOC106587503 coding downstream 159617 73011717 ~ 73013424 (+)
LOC110526541 rps13 coding downstream 164113 73016213 ~ 73020001 (+)
LOC118965112 NA coding downstream 165308 73017408 ~ 73017539 (+)
G542906 NA non-coding upstream 18917 72832504 ~ 72832731 (+)
G542843 sdhaf2 non-coding upstream 25216 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 30677 72819924 ~ 72820971 (+)
G542902 NA non-coding upstream 46044 72805403 ~ 72805604 (+)
G542901 NA non-coding upstream 47463 72803808 ~ 72804185 (+)
G542994 NA non-coding downstream 135156 72987256 ~ 72987462 (+)
G543009 NA non-coding downstream 176100 73028200 ~ 73028554 (+)
G543012 NA non-coding downstream 179427 73031527 ~ 73031864 (+)
G543013 NA non-coding downstream 180016 73032116 ~ 73032334 (+)
G543014 NA non-coding downstream 180411 73032511 ~ 73032760 (+)
G542890 NA other upstream 84797 72765681 ~ 72766851 (+)
saa saa other upstream 184776 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 699254 72151020 ~ 72152394 (+)
G542053 NA other upstream 749174 72101380 ~ 72102474 (+)
G541903 NA other upstream 1047186 71800040 ~ 71804462 (+)
LOC110526543 LOC106587517 other downstream 186521 73037953 ~ 73182742 (+)
LOC100136290 sox6 other downstream 520705 73190979 ~ 73392251 (+)
G544565 NA other downstream 1435678 74287778 ~ 74288138 (+)
G545485 NA other downstream 2385700 75237800 ~ 75238164 (+)
G545601 NA other downstream 2569761 75421861 ~ 75422752 (+)

Expression


Co-expression Network