G543238 (ext2)


Basic Information

Item Value
gene id G543238
gene name ext2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 72888515 ~ 72894947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615166
GGGGGTTGTTCCACTGTTCGTAGGTGCAGGCAGCATAGGGGTAAATGCGGTCATTGATGATCTGAAGCGTTGTCATGCCGATGGCCTTCATGGAGCTGAAGTAAGCGTCCCAGAACCAGCGGGCCTGTCTTTGCATCTCCTCCACCTGCCTGTGAGGGATACTCTTCAAGATGGTGTACATCTCTGGGAGCTTCTCCTCTGGAATGACCACGGATGCCCTCTTCCAGTCGAGGACCTCAGAGAAGGGCAGGATGTATGAGTCTGCTAGGATGACAGGGACACAGCCAGCCTGCAGCACATCACTGAGGGTGGCCTGTCCCAGCCGAGCCCCGCGCAGCACCACACAGAACGACGACTCCTGGGGAACACAGATTACCACGAGGTATTACAGTATCATAGCCATATCAACTGTACATGGTTTTATGACATAGCTGTCTACAAACTAAGGAAGCATAGATGGGTCAAAAACAGACTAACACAATATT

Function

symbol description
ext2 Predicted to enable N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity and acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including animal organ development; axon guidance; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Used to study hereditary multiple exostoses. Orthologous to human EXT2 (exostosin glycosyltransferase 2).

NR:

description
exostosin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615166 True 485 lncRNA 0.52 3 72888515 72894947

Neighbor

gene id symbol gene type direction distance location
LOC110526535 NA coding downstream 51268 72833270 ~ 72837247 (-)
rpb10 NA coding downstream 56637 72830481 ~ 72831878 (-)
LOC110526534 sdhaf2 coding downstream 61828 72823238 ~ 72826687 (-)
LOC110526964 LOC106587485 coding downstream 359139 72504884 ~ 72529376 (-)
LOC110526521 LOC106587483 coding downstream 519840 72341021 ~ 72368675 (-)
LOC110526538 LOC106587508 coding upstream 12627 72907574 ~ 72933603 (-)
LOC110526540 LOC106587507 coding upstream 107198 73002145 ~ 73007919 (-)
LOC118964932 NA coding upstream 372175 73267122 ~ 73267581 (-)
LOC100135817 LOC100135817 coding upstream 705060 73600007 ~ 73604526 (-)
pde3b pde3b coding upstream 740003 73634950 ~ 73725162 (-)
G543240 NA non-coding downstream 582 72887391 ~ 72887933 (-)
G543251 ext2 non-coding downstream 2862 72884417 ~ 72885653 (-)
G543219 NA non-coding downstream 67042 72819834 ~ 72821473 (-)
G543225 NA non-coding downstream 72862 72810903 ~ 72815653 (-)
G543318 NA non-coding upstream 125251 73020198 ~ 73020797 (-)
G543326 NA non-coding upstream 126333 73021280 ~ 73021701 (-)
G543328 NA non-coding upstream 127400 73022347 ~ 73022871 (-)
G543329 NA non-coding upstream 128379 73023326 ~ 73023551 (-)
G543336 NA non-coding upstream 138978 73033925 ~ 73034130 (-)
G543224 LOC106587514 other downstream 78343 72809777 ~ 72810172 (-)
G543091 NA other downstream 166697 72600275 ~ 72721818 (-)
G543092 NA other downstream 221802 72659456 ~ 72666713 (-)
G541798 NA other downstream 1274675 71609531 ~ 71613840 (-)
LOC110526488 LOC106562298 other downstream 2222654 70623828 ~ 70666213 (-)
G543313 LOC106587506 other upstream 102581 72997528 ~ 73020000 (-)
G543334 NA other upstream 133826 73028773 ~ 73029102 (-)
G543823 NA other upstream 667412 73562359 ~ 73562863 (-)
sinhcafl fa60a other upstream 1374296 74269202 ~ 74274416 (-)

Expression


Co-expression Network