G543318


Basic Information

Item Value
gene id G543318
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73020198 ~ 73020797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615256
tacgctactgctactcggtttatcatatatgcatagtcactaactatagtcatgtacatactacctcaattgtcccaaccaaccagtgctcccacacattggctcaCCGGGTTATCTGCAGTGTGTCCCACCACACCCTCTTTGACGCTACTGtcatatatgcagtcactttaaccatatctacatactacctcaatcagcctaactgatgtctgtatgtagcctcactactgtatattgcCCCACTCCTATTTCACTGTCTTTTTAGTctttactttcccattgttcacctaataccttttttgtactattggttagagcctgtaagtaaacatttcactgtaagatctgtAGTATTtggcgcaagtgacaaataaaccTTGATTTGATGGACAACCCTGCAGTAAGCATGCCAGTTCTACATTCCCTCAAAAATTGCAacatgtgacattgtgttgtgtgacaactgcacatagtggcctttcattgtccccagaacaagaagcacctgtttaatgatcatgctgtcatcagcttcttgattagccacacctgttaggtggatggattatcatggcaaagcagaaatgctcactaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615256 True 600 lncRNA 0.42 1 73020198 73020797

Neighbor

gene id symbol gene type direction distance location
LOC110526540 LOC106587507 coding downstream 12279 73002145 ~ 73007919 (-)
LOC110526538 LOC106587508 coding downstream 86595 72907574 ~ 72933603 (-)
LOC110526535 NA coding downstream 182951 72833270 ~ 72837247 (-)
rpb10 NA coding downstream 188320 72830481 ~ 72831878 (-)
LOC110526534 sdhaf2 coding downstream 193511 72823238 ~ 72826687 (-)
LOC118964932 NA coding upstream 246325 73267122 ~ 73267581 (-)
LOC100135817 LOC100135817 coding upstream 579210 73600007 ~ 73604526 (-)
pde3b pde3b coding upstream 614153 73634950 ~ 73725162 (-)
ric3a LOC106587537 coding upstream 871472 73892269 ~ 73897040 (-)
LOC110526553 rbtn1 coding upstream 916567 73937364 ~ 73961097 (-)
G543238 ext2 non-coding downstream 125251 72888515 ~ 72894947 (-)
G543240 NA non-coding downstream 132265 72887391 ~ 72887933 (-)
G543251 ext2 non-coding downstream 134545 72884417 ~ 72885653 (-)
G543219 NA non-coding downstream 198725 72819834 ~ 72821473 (-)
G543326 NA non-coding upstream 483 73021280 ~ 73021701 (-)
G543328 NA non-coding upstream 1550 73022347 ~ 73022871 (-)
G543329 NA non-coding upstream 2529 73023326 ~ 73023551 (-)
G543336 NA non-coding upstream 13128 73033925 ~ 73034130 (-)
G543339 NA non-coding upstream 16594 73037391 ~ 73037670 (-)
G543313 LOC106587506 other downstream 198 72997528 ~ 73020000 (-)
G543224 LOC106587514 other downstream 210026 72809777 ~ 72810172 (-)
G543091 NA other downstream 298380 72600275 ~ 72721818 (-)
G543092 NA other downstream 353485 72659456 ~ 72666713 (-)
G543334 NA other upstream 7976 73028773 ~ 73029102 (-)
G543823 NA other upstream 541562 73562359 ~ 73562863 (-)
sinhcafl fa60a other upstream 1248446 74269202 ~ 74274416 (-)
dennd5a LOC106587543 other upstream 1260212 74274850 ~ 74333920 (-)
G544882 LOC106562356 other upstream 1338464 74359261 ~ 74360422 (-)

Expression


Co-expression Network