G543009


Basic Information

Item Value
gene id G543009
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73028200 ~ 73028554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614891
GTTTTGTATTGTcgtatcacacctggttccaatcccatcaattacatgttgcgtatttaaccctctgttcccccctcatgtcttgtcggtgattgtttgtttgtaagctATGTGCAAGTTatgttctggtgtgcgacgggttttgtacccacttgtattattttgtatatttggGTTTTCGGAGATTTTGAGAACTTATTTAACTGCtctgtttataccaagttcgatctcctgcgcctgacttccctgccaccagcacgcaccccttacagaatcaccGAACCgactatggagtcagcaggagcaggtaccccggtTATAGGGGTGGAGGAGCGCGTCCGGGAGCACACAGCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614891 True 355 lncRNA 0.48 1 73028200 73028554

Neighbor

gene id symbol gene type direction distance location
LOC110526541 rps13 coding upstream 8199 73016213 ~ 73020001 (+)
LOC118965119 NA coding upstream 8500 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 8943 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 10661 73017408 ~ 73017539 (+)
LOC110525049 LOC106587503 coding upstream 14776 73011717 ~ 73013424 (+)
LOC110526543 LOC106587517 coding downstream 9399 73037953 ~ 73182742 (+)
LOC100136290 sox6 coding downstream 162425 73190979 ~ 73392251 (+)
LOC110526546 LOC106587531 coding downstream 588274 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 697573 73726127 ~ 73731840 (+)
copb1 copb coding downstream 705243 73733797 ~ 73741617 (+)
G542994 NA non-coding upstream 40738 72987256 ~ 72987462 (+)
G542916 NA non-coding upstream 176100 72851648 ~ 72852100 (+)
G542906 NA non-coding upstream 195469 72832504 ~ 72832731 (+)
G542843 sdhaf2 non-coding upstream 201768 72823236 ~ 72826432 (+)
G542905 NA non-coding upstream 207229 72819924 ~ 72820971 (+)
G543012 NA non-coding downstream 2973 73031527 ~ 73031864 (+)
G543013 NA non-coding downstream 3562 73032116 ~ 73032334 (+)
G543014 NA non-coding downstream 3957 73032511 ~ 73032760 (+)
G543016 NA non-coding downstream 6560 73035114 ~ 73035455 (+)
G543017 NA non-coding downstream 7889 73036443 ~ 73037024 (+)
G542890 NA other upstream 261349 72765681 ~ 72766851 (+)
saa saa other upstream 361328 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 875806 72151020 ~ 72152394 (+)
G542053 NA other upstream 925726 72101380 ~ 72102474 (+)
G541903 NA other upstream 1223738 71800040 ~ 71804462 (+)
G544565 NA other downstream 1259224 74287778 ~ 74288138 (+)
G545485 NA other downstream 2209246 75237800 ~ 75238164 (+)
G545601 NA other downstream 2393307 75421861 ~ 75422752 (+)

Expression


Co-expression Network