G543017


Basic Information

Item Value
gene id G543017
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73036443 ~ 73037024 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU614902
gttggattgggagctttgctgcacagctattttcagctctctccagaaatgttcgattggattcaagtccggactctggctgggccactcacggacattcagagacttgtcctgaagccactcctgccttgtcttggctgtgtacttagggtcattgtcttgttgtaaggtgaacctttgccccagtctgaggtcctgagcactctggagaaggTTGCCATCAAgcacctctctgtactttgctctgttcatctcgatcctgactagtctcccagtccctgctgctgaaaaacattcccacagcatgatggtgccaccaccatgcttcactgtagcaatggtgccaggtttcctccagacgtgaagcttgacattcaggcaaaatagttcaattttggtttcatcagaccagagaatcttgtttctcatggtctgagtgtctttagataccttttggcaaactccaagtgggctgtcatgtgcattttactgagaagtggcttccgtctggccactctaccataaaggcctgattggtgaggtgctgcagagatggttgtccttctgaaaggttctcccccC

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU614902 True 582 lncRNA 0.49 1 73036443 73037024

Neighbor

gene id symbol gene type direction distance location
LOC110526541 rps13 coding upstream 16442 73016213 ~ 73020001 (+)
LOC118965119 NA coding upstream 16743 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 17186 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 18904 73017408 ~ 73017539 (+)
LOC110525049 LOC106587503 coding upstream 23019 73011717 ~ 73013424 (+)
LOC110526543 LOC106587517 coding downstream 929 73037953 ~ 73182742 (+)
LOC100136290 sox6 coding downstream 153955 73190979 ~ 73392251 (+)
LOC110526546 LOC106587531 coding downstream 579804 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 689103 73726127 ~ 73731840 (+)
copb1 copb coding downstream 696773 73733797 ~ 73741617 (+)
G543016 NA non-coding upstream 988 73035114 ~ 73035455 (+)
G543014 NA non-coding upstream 3683 73032511 ~ 73032760 (+)
G543013 NA non-coding upstream 4109 73032116 ~ 73032334 (+)
G543012 NA non-coding upstream 4579 73031527 ~ 73031864 (+)
G543009 NA non-coding upstream 7889 73028200 ~ 73028554 (+)
G543050 NA non-coding downstream 46663 73083687 ~ 73085986 (+)
G543414 NA non-coding downstream 146622 73183646 ~ 73183904 (+)
G543426 NA non-coding downstream 159412 73196436 ~ 73200010 (+)
G543435 NA non-coding downstream 183007 73220031 ~ 73253625 (+)
G542890 NA other upstream 269592 72765681 ~ 72766851 (+)
saa saa other upstream 369571 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 884049 72151020 ~ 72152394 (+)
G542053 NA other upstream 933969 72101380 ~ 72102474 (+)
G541903 NA other upstream 1231981 71800040 ~ 71804462 (+)
G544565 NA other downstream 1250754 74287778 ~ 74288138 (+)
G545485 NA other downstream 2200776 75237800 ~ 75238164 (+)
G545601 NA other downstream 2384837 75421861 ~ 75422752 (+)

Expression


Co-expression Network