G543414


Basic Information

Item Value
gene id G543414
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73183646 ~ 73183904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615370
caaggccaaatctacactggagtttcttaccaagaagacagtgaatgttcctgagtggctgagttacagttttgactgaaatctacttgaaaatctatggcaagacctgaaaatgtttTTCTAGCAATAATCAatcaccaatttgacagagcttgaagaatttgaaaagaataatgggtaaatgttgcacaatctaTGTGTGGAAAgaccttagagacttacccagaaagagtgcttctacaaagtattgactcagggg

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615370 True 259 lncRNA 0.38 1 73183646 73183904

Neighbor

gene id symbol gene type direction distance location
LOC110526543 LOC106587517 coding upstream 904 73037953 ~ 73182742 (+)
LOC110526541 rps13 coding upstream 163645 73016213 ~ 73020001 (+)
LOC118965119 NA coding upstream 163946 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 164389 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 166107 73017408 ~ 73017539 (+)
LOC100136290 sox6 coding downstream 7075 73190979 ~ 73392251 (+)
LOC110526546 LOC106587531 coding downstream 432924 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 542223 73726127 ~ 73731840 (+)
copb1 copb coding downstream 549893 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 560995 73744899 ~ 73789243 (+)
G543050 NA non-coding upstream 97660 73083687 ~ 73085986 (+)
G543017 NA non-coding upstream 146622 73036443 ~ 73037024 (+)
G543016 NA non-coding upstream 148191 73035114 ~ 73035455 (+)
G543014 NA non-coding upstream 150886 73032511 ~ 73032760 (+)
G543013 NA non-coding upstream 151312 73032116 ~ 73032334 (+)
G543426 NA non-coding downstream 12532 73196436 ~ 73200010 (+)
G543435 NA non-coding downstream 36127 73220031 ~ 73253625 (+)
G543650 NA non-coding downstream 228809 73412713 ~ 73412931 (+)
G543656 NA non-coding downstream 232981 73416885 ~ 73417159 (+)
G542890 NA other upstream 416795 72765681 ~ 72766851 (+)
saa saa other upstream 516774 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1031252 72151020 ~ 72152394 (+)
G542053 NA other upstream 1081172 72101380 ~ 72102474 (+)
G544565 NA other downstream 1103874 74287778 ~ 74288138 (+)
G545485 NA other downstream 2053896 75237800 ~ 75238164 (+)
G545601 NA other downstream 2237957 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2744324 75928228 ~ 75970674 (+)

Expression


Co-expression Network