G543426



Basic Information


Item Value
gene id G543426
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73196436 ~ 73200010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU615389
GTGACATCTGTCTTTATAAGTGTTAGCTAATTTGCAGCAGAATATTTCAACAATGATCAAAACCGATGGCAAACCGATGGCAACATGTTCATTACAGGAGTCTTTCTTTTGTAGTCCTCTGATTTTTCTGCTTCAAGTTCTCAACGTGCATTATTGAAGGGCTTTGGCACCTTCAGATCTGGCACCATTATGATCTTCTTGTATGACACAATTAAAAAAAGATGCTCTTTACAGCACATTAATGCGCAATGATTTTAATTTGCATTATGCAAACTGTGAATGCAGTTTTAATAAATTAAGTGAAGACTTCCAATGTAAATGAAACATGCCTAAAATGACTTTCAAAGAATCCTCACATCTTTTTATGCCCTTTCTGGCTTGAGGTGAACACATCTCAAGGATCTTTGCATTTCCAACGTTGACAGTCTAGAGAGGGTCCAGGCTCCATCTCTGAATGTAATGGTTTTGTTCCTAGAGAAAATGTACGCCTCTCAGTACAAACCATTCTCACCACTCATGGGTGATGGGTGAGTCTTGAAATATTGATGAAATAAATTTTTCTAGTGAGACATCAGTATCAGACAATGGGGGCATCCAGAGGCTAGCTATCTAACTGTACAGACACAGATGATTTTCAAGTCTTGAAGATGGATACTGTAGATTAATGATTAGACACATGGTCTTGGTGAGATGCGTAAGTCCTCATACTTAGTTATTATCAGACTTAAGAATTTTTTTCAGAATTTTAAGTAAAAATTAGCTAGGCTAATCTTATCTGGGGTTTAACTACACTCCCAAATTGCAATCTTGCTTTAGATTAGAATACGGATTCTGAATCTACTGCACATCGGGACATGTCAGTGAAGTTGTTTGTATTTTAGCTGCAGTCCAAGCTAAATGTGTTGTTTCTTTATAAAGGCTTTCATTGTTTTCTTCTTAGTAACCTTGGGTCCAGATGACTTCTGCTGTGAGATTACATGAACTACATACAATTACATTCAATTAAATAGGTTGAGTGCATCCTTTTCTTTAAATTGAAAACCATCAGCACCTGTATCCCATTACATGTTGAAGACCAAGGTACAGTaccagaaagagatagagagagatttcCCTATAGAATCAACCAGACCTCTAGTATCACATTACACGTTGAAGACCAAGGTACAgtaccagagagagatagagagagatttcCCTATAGAATCAACCAGACCTCTAGTATCACATTAGCTGTTAAGTGTTTGGTAGGGAACTGGGTTTGAACATTATGATTTCAAAATTAGTATTAGTATTTTACACGGGTATAAATAAAGCTAAACCAATGTACATTTTGAGCAATTGTATCGCTTCACATGGACAATATAATTTCATAACTCACCAAAGGGGTACAATTTgaactgtttcattcactcacccATTGAATATGTTTCACGTTTGGACTGCAAAATAATTGGACAATTTATTTTAATCCAAAGCATAGTTGTGCATAATTAAGTTAGACTTCAAAATGCAACAGTGCCGGCTATGGTAAATAGTCTCTGTTGAATACTCTCTTTCTAAATATCACACATTAATATGTAGAATTAATTGGAGGGGCCTTGGTGGCCGTGTGTTTTTGACACAGGGCTGTTTCTGTAGGGGACGGTAATCAGTAGCACTGTCAGCTGGAGGAATTAGTACAGCTCATTGTTTCTACGAGTCACATGAAGATTTGCACAGTCCATGTGTGAAGATGACTGGCTCTATTTCCATATCAAAGAGGCCCACAGTGCTGCCTGTAATTAAAATGCAGTGGTTTTGGGAGCCCTTGCTCGGCACACAGTTAGCACAGTACACTGAAGCAGCCGAGTGTTGTCATCTTTCCCTAGGAGTGTGCAAGCGGTCGACTCCTGCATGCTTCTCTCAATACACCTATAATTTTGTACAAATGTGAATGCCAGTCCACGCTCCTTTTGTGGAGAGTTTAGTTTTCTTTATCTAGCCTCTCGTTTTGGCTGCCTGTTTTATTTTAGCCCTCAGAATAGACATGATTTAGTGTACGTTATTGTCATGTCAACTGTTGACATTGACAGTGATATTTCATATTCTATATGCACTGTATTCATTGGCAGTATTTATTCATAACCTTTATTGTGGAAAGGCCATGAAATCCCACTCTTGCATTCCATGATTTACATTACTTGTTATTAGTTAGTGACCTTGTTGCATATTTCTCCAAACGGTGCCGGGATCAACAGTTCCTTGTTGGTTTGTTCGACAGTGTATTGTGGTCTCTGTCCTTCCTGAATTGGAGAAGATCTGAGGTTGGGTCTTGTGAGAGAACGAGGGAAGAGAGATTACTGCGATGTGGGCCTCTATGCTGCTCGAATACAAAGGCCTCAGAACAACCCTTTCCTTGTGATCCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCCATTGTGTTTGGATCAGGCCTTTCCTTGTGATCCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCCATTGTGTTTGATCAGGCCTTCCCTTGTGATCCCCAATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCCATTGTGTTTGGATCAGGCCTTCCCTTGTGATCCCCATTGTGTTTGGATCAGGCCTTCCCTTGGGCCGGCCGCTGCCAAGGACTTAGTACAAAAGGACACTATGGAAATATCAAACTGGAAACCAACATgggcagctctctgggtgagagcGAGGTACCAGGAAGAAAACTTTGTATGCCCGTCACCCTGTTCTAATTACAATGTATTACATTCAGGATGCATTTTGTCCATTGATATTAGCATTTACAAGGAGGATTGGTGACACTAGTAATTTGGAAAACCCGACTGGATAAACTTACTGGGAATGATGTAAGCTCCATGAAAAGTCTTACTTGGAAATGTAAAATAGGAAATTCCCTTTCCTCTTGAAAAGTCGACTCCTgcatgcaggtagcctagtggttagagcattggacttgtaaccgaaaggttacaacattgaatccctgagttgacaaggtaaaaatctgttgttctgcccccgaacaaggcagttaacccactgttcctaggccaccattgaaaataagaatttgttcttaactgacttgccttgttaaataaaggtaaaaaatatatatgtacatgttATGCATAGGTTTGTAATGAGCTGAAATTGGAGCGTCCTGTACTACTTAAAGG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU615389 True 3337 lncRNA 0.40 4 73196436 73200010

Neighbor


gene id symbol gene type direction distance location
LOC110526543 LOC106587517 coding upstream 13694 73037953 ~ 73182742 (+)
LOC110526541 rps13 coding upstream 176435 73016213 ~ 73020001 (+)
LOC110526546 LOC106587531 coding downstream 416818 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 526117 73726127 ~ 73731840 (+)
copb1 copb coding downstream 533787 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 544889 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 593625 73793635 ~ 73891981 (+)
G543414 NA non-coding upstream 12532 73183646 ~ 73183904 (+)
G543050 NA non-coding upstream 110450 73083687 ~ 73085986 (+)
G543017 NA non-coding upstream 159412 73036443 ~ 73037024 (+)
G543016 NA non-coding upstream 160981 73035114 ~ 73035455 (+)
G543014 NA non-coding upstream 163676 73032511 ~ 73032760 (+)
G543435 NA non-coding downstream 20021 73220031 ~ 73253625 (+)
LOC100136290 sox6 non-coding downstream 190072 73190979 ~ 73392251 (+)
G543650 NA non-coding downstream 212703 73412713 ~ 73412931 (+)
G543656 NA non-coding downstream 216875 73416885 ~ 73417159 (+)
G543671 NA non-coding downstream 228435 73428445 ~ 73428654 (+)
G542890 NA other upstream 429585 72765681 ~ 72766851 (+)
saa saa other upstream 529564 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1044042 72151020 ~ 72152394 (+)
G542053 NA other upstream 1093962 72101380 ~ 72102474 (+)
G544565 NA other downstream 1087768 74287778 ~ 74288138 (+)
G545485 NA other downstream 2037790 75237800 ~ 75238164 (+)
G545601 NA other downstream 2221851 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2728218 75928228 ~ 75970674 (+)

Expression



Co-expression Network