G543435


Basic Information

Item Value
gene id G543435
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73220031 ~ 73253625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615400
tgtgtgtctgtttttccaTCTCTGACCCTGTGCGGGTGCGCGTGTCTGTccgtatgtgtatgtgtgtgtgtgtgtgtgtatgtgtgtatgtgtatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615400 True 304 lncRNA 0.47 2 73220031 73253625

Neighbor

gene id symbol gene type direction distance location
LOC110526543 LOC106587517 coding upstream 37289 73037953 ~ 73182742 (+)
LOC110526541 rps13 coding upstream 200030 73016213 ~ 73020001 (+)
LOC110526546 LOC106587531 coding downstream 363203 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 472502 73726127 ~ 73731840 (+)
copb1 copb coding downstream 480172 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 491274 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 540010 73793635 ~ 73891981 (+)
G543426 NA non-coding upstream 20021 73196436 ~ 73200010 (+)
G543414 NA non-coding upstream 36127 73183646 ~ 73183904 (+)
G543050 NA non-coding upstream 134045 73083687 ~ 73085986 (+)
G543017 NA non-coding upstream 183007 73036443 ~ 73037024 (+)
G543016 NA non-coding upstream 184576 73035114 ~ 73035455 (+)
LOC100136290 sox6 non-coding downstream 136457 73190979 ~ 73392251 (+)
G543650 NA non-coding downstream 159088 73412713 ~ 73412931 (+)
G543656 NA non-coding downstream 163260 73416885 ~ 73417159 (+)
G543671 NA non-coding downstream 174820 73428445 ~ 73428654 (+)
G543696 NA non-coding downstream 193570 73447195 ~ 73447462 (+)
G542890 NA other upstream 453180 72765681 ~ 72766851 (+)
saa saa other upstream 553159 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1067637 72151020 ~ 72152394 (+)
G542053 NA other upstream 1117557 72101380 ~ 72102474 (+)
G544565 NA other downstream 1034153 74287778 ~ 74288138 (+)
G545485 NA other downstream 1984175 75237800 ~ 75238164 (+)
G545601 NA other downstream 2168236 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2674603 75928228 ~ 75970674 (+)

Expression


Co-expression Network