G543650


Basic Information

Item Value
gene id G543650
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73412713 ~ 73412931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615631
gaaaccatgtgtttgatgtatttgataccattccactaattccgctccagccattatcacaagcccgtcctccccaattaaggttccaCCAACGTCCTGTGATTGACCTTCAGTATGTTGACCTTCTATGAGTGTTTGTGGTTTTGAGAGATGTGTTTTGGCACTGTCTCCATTGGGCCAAGGTGAGAAGCATCAGGTACGTTCCACCTGCGGTACGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615631 True 219 lncRNA 0.47 1 73412713 73412931

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 20464 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 229971 73037953 ~ 73182742 (+)
LOC110526541 rps13 coding upstream 392712 73016213 ~ 73020001 (+)
LOC110526546 LOC106587531 coding downstream 203897 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 313196 73726127 ~ 73731840 (+)
copb1 copb coding downstream 320866 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 331968 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 380704 73793635 ~ 73891981 (+)
G543435 NA non-coding upstream 159088 73220031 ~ 73253625 (+)
G543426 NA non-coding upstream 212703 73196436 ~ 73200010 (+)
G543414 NA non-coding upstream 228809 73183646 ~ 73183904 (+)
G543050 NA non-coding upstream 326727 73083687 ~ 73085986 (+)
G543656 NA non-coding downstream 3954 73416885 ~ 73417159 (+)
G543671 NA non-coding downstream 15514 73428445 ~ 73428654 (+)
G543696 NA non-coding downstream 34264 73447195 ~ 73447462 (+)
G543704 NA non-coding downstream 38866 73451797 ~ 73452020 (+)
G543713 NA non-coding downstream 43020 73455951 ~ 73456158 (+)
G542890 NA other upstream 645862 72765681 ~ 72766851 (+)
saa saa other upstream 745841 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1260319 72151020 ~ 72152394 (+)
G544565 NA other downstream 874847 74287778 ~ 74288138 (+)
G545485 NA other downstream 1824869 75237800 ~ 75238164 (+)
G545601 NA other downstream 2008930 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2515297 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3474501 76827001 ~ 77038395 (+)

Expression


Co-expression Network