G543671



Basic Information


Item Value
gene id G543671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73428445 ~ 73428654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU615652
GTGCTATTTACTCTAACCTCAGATACAACAACCCTTACCACGGGCACGCTGACTGAGTACCACCTTTTCCCAGGTTATCCCCACAGTGGAGTTCCATCTACTGGACTACGATGGTACTGCTCTGTCTGTGAAATATTCAACTCAGCGACCCGCAATCAAGATCACATCACCTCAACACACTCCTTCAGATCCTTATTGACAGTGACCCCC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU615652 True 210 lncRNA 0.49 1 73428445 73428654

Neighbor


gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 36196 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 245703 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 408745 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 409188 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 410906 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 188174 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 297473 73726127 ~ 73731840 (+)
copb1 copb coding downstream 305143 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 316245 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 364981 73793635 ~ 73891981 (+)
G543656 NA non-coding upstream 11286 73416885 ~ 73417159 (+)
G543650 NA non-coding upstream 15514 73412713 ~ 73412931 (+)
G543435 NA non-coding upstream 174820 73220031 ~ 73253625 (+)
G543426 NA non-coding upstream 228435 73196436 ~ 73200010 (+)
G543696 NA non-coding downstream 18541 73447195 ~ 73447462 (+)
G543704 NA non-coding downstream 23143 73451797 ~ 73452020 (+)
G543713 NA non-coding downstream 27297 73455951 ~ 73456158 (+)
G543728 NA non-coding downstream 42794 73471448 ~ 73471777 (+)
G543736 NA non-coding downstream 51260 73479914 ~ 73480138 (+)
G542890 NA other upstream 661594 72765681 ~ 72766851 (+)
saa saa other upstream 761573 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1276051 72151020 ~ 72152394 (+)
G544565 NA other downstream 859124 74287778 ~ 74288138 (+)
G545485 NA other downstream 1809146 75237800 ~ 75238164 (+)
G545601 NA other downstream 1993207 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2499574 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3458778 76827001 ~ 77038395 (+)

Expression



Co-expression Network