G543704


Basic Information

Item Value
gene id G543704
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73451797 ~ 73452020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615685
TGTTCAGATCGTTGGGCCTGGCAGTTAGAGGAGCCTataatgcaggaaatgtaaaacttgtagtgtatttgaggtttataaaggcttctgaagtttgtaatgcATTTATATGTAAAGGTCCAatacagacatttttttttatctcaatatcaaatcatttctgggtaacaattaaataccttactgtgattgttttcaattaaaatggtcaaaaagaaacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615685 True 224 lncRNA 0.31 1 73451797 73452020

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 59548 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 269055 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 432097 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 432540 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 434258 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 164808 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 274107 73726127 ~ 73731840 (+)
copb1 copb coding downstream 281777 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 292879 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 341615 73793635 ~ 73891981 (+)
G543696 NA non-coding upstream 4335 73447195 ~ 73447462 (+)
G543671 NA non-coding upstream 23143 73428445 ~ 73428654 (+)
G543656 NA non-coding upstream 34638 73416885 ~ 73417159 (+)
G543650 NA non-coding upstream 38866 73412713 ~ 73412931 (+)
G543713 NA non-coding downstream 3931 73455951 ~ 73456158 (+)
G543728 NA non-coding downstream 19428 73471448 ~ 73471777 (+)
G543736 NA non-coding downstream 27894 73479914 ~ 73480138 (+)
G543746 NA non-coding downstream 32531 73484551 ~ 73484905 (+)
G543773 NA non-coding downstream 47945 73499965 ~ 73500180 (+)
G542890 NA other upstream 684946 72765681 ~ 72766851 (+)
saa saa other upstream 784925 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1299403 72151020 ~ 72152394 (+)
G544565 NA other downstream 835758 74287778 ~ 74288138 (+)
G545485 NA other downstream 1785780 75237800 ~ 75238164 (+)
G545601 NA other downstream 1969841 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2476208 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3435412 76827001 ~ 77038395 (+)

Expression


Co-expression Network