G543746


Basic Information

Item Value
gene id G543746
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73484551 ~ 73484905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615727
gttatgatggctgtgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaccttcaggcatttgaaaattgctcccaaggatggaccagacttgtcgaggtctacaactatttttctgaggtcttggctgatttcttttgaattttccatgatgtcaagcaaagaggcactgagtatgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaattatgtcaattaacctatcagaaacttctaaagccatgacatcattttctggaattttccaagctgtttaaccagttgcatctctaggggcgctatttcatttttggat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615727 True 355 lncRNA 0.40 1 73484551 73484905

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 92302 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 301809 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 464851 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 465294 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 467012 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 131923 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 241222 73726127 ~ 73731840 (+)
copb1 copb coding downstream 248892 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 259994 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 308730 73793635 ~ 73891981 (+)
G543736 NA non-coding upstream 4413 73479914 ~ 73480138 (+)
G543728 NA non-coding upstream 12774 73471448 ~ 73471777 (+)
G543713 NA non-coding upstream 28393 73455951 ~ 73456158 (+)
G543704 NA non-coding upstream 32531 73451797 ~ 73452020 (+)
G543696 NA non-coding upstream 37089 73447195 ~ 73447462 (+)
G543773 NA non-coding downstream 15060 73499965 ~ 73500180 (+)
G543779 NA non-coding downstream 20227 73505132 ~ 73505393 (+)
G543783 NA non-coding downstream 25737 73510642 ~ 73510940 (+)
G543810 NA non-coding downstream 55633 73540538 ~ 73540746 (+)
G543818 NA non-coding downstream 62296 73547201 ~ 73547743 (+)
G542890 NA other upstream 717700 72765681 ~ 72766851 (+)
saa saa other upstream 817679 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1332157 72151020 ~ 72152394 (+)
G544565 NA other downstream 802873 74287778 ~ 74288138 (+)
G545485 NA other downstream 1752895 75237800 ~ 75238164 (+)
G545601 NA other downstream 1936956 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2443323 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3402527 76827001 ~ 77038395 (+)

Expression


Co-expression Network