G543773


Basic Information

Item Value
gene id G543773
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73499965 ~ 73500180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615754
CAATataatttggggcggcaggtagcctagtggttagagcgttgggccagtaaccaaaaggttgctggattgaatcgcaaggctgacaaggtaaaaatctgttccgcccctgaacaaggcagttaacccactgttccccagtaggctgtcattgtaataagaatttgttcttaactgacttgcctagttaaataacatttGAATTCTACCATATTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615754 True 216 lncRNA 0.43 1 73499965 73500180

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 107716 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 317223 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 480265 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 480708 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 482426 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 116648 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 225947 73726127 ~ 73731840 (+)
copb1 copb coding downstream 233617 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 244719 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 293455 73793635 ~ 73891981 (+)
G543746 NA non-coding upstream 15060 73484551 ~ 73484905 (+)
G543736 NA non-coding upstream 19827 73479914 ~ 73480138 (+)
G543728 NA non-coding upstream 28188 73471448 ~ 73471777 (+)
G543713 NA non-coding upstream 43807 73455951 ~ 73456158 (+)
G543704 NA non-coding upstream 47945 73451797 ~ 73452020 (+)
G543779 NA non-coding downstream 4952 73505132 ~ 73505393 (+)
G543783 NA non-coding downstream 10462 73510642 ~ 73510940 (+)
G543810 NA non-coding downstream 40358 73540538 ~ 73540746 (+)
G543818 NA non-coding downstream 47021 73547201 ~ 73547743 (+)
G543820 NA non-coding downstream 47696 73547876 ~ 73548204 (+)
G542890 NA other upstream 733114 72765681 ~ 72766851 (+)
saa saa other upstream 833093 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1347571 72151020 ~ 72152394 (+)
G544565 NA other downstream 787598 74287778 ~ 74288138 (+)
G545485 NA other downstream 1737620 75237800 ~ 75238164 (+)
G545601 NA other downstream 1921681 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2428048 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3387252 76827001 ~ 77038395 (+)

Expression


Co-expression Network