G543779


Basic Information

Item Value
gene id G543779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73505132 ~ 73505393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615760
attgagagcatcctggcgggttgcatcactgactggaatggcaactgttcggcctccgaccgcaaggcactatagagggcagtgcatactgcccagtacatcactggggccaagcttcctgccatccaggacctctataccaggcggtgtcagaagaaggccctaaaaattgtcaaagactacagccaccctagtcatagactgttctctctgctaccgcaccggaagcggtaccggagtgccaagtctaggtacaagaggc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615760 True 262 lncRNA 0.55 1 73505132 73505393

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 112883 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 322390 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 485432 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 485875 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 487593 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 111435 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 220734 73726127 ~ 73731840 (+)
copb1 copb coding downstream 228404 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 239506 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 288242 73793635 ~ 73891981 (+)
G543773 NA non-coding upstream 4952 73499965 ~ 73500180 (+)
G543746 NA non-coding upstream 20227 73484551 ~ 73484905 (+)
G543736 NA non-coding upstream 24994 73479914 ~ 73480138 (+)
G543728 NA non-coding upstream 33355 73471448 ~ 73471777 (+)
G543713 NA non-coding upstream 48974 73455951 ~ 73456158 (+)
G543783 NA non-coding downstream 5249 73510642 ~ 73510940 (+)
G543810 NA non-coding downstream 35145 73540538 ~ 73540746 (+)
G543818 NA non-coding downstream 41808 73547201 ~ 73547743 (+)
G543820 NA non-coding downstream 42483 73547876 ~ 73548204 (+)
G543822 NA non-coding downstream 56974 73562367 ~ 73562593 (+)
G542890 NA other upstream 738281 72765681 ~ 72766851 (+)
saa saa other upstream 838260 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1352738 72151020 ~ 72152394 (+)
G544565 NA other downstream 782385 74287778 ~ 74288138 (+)
G545485 NA other downstream 1732407 75237800 ~ 75238164 (+)
G545601 NA other downstream 1916468 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2422835 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3382039 76827001 ~ 77038395 (+)

Expression


Co-expression Network