G543810


Basic Information

Item Value
gene id G543810
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73540538 ~ 73540746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615791
acagagcctgggtgcgaacccagggactctgatggcacagctagcgctggagtacagcgcccttaaccactgcgccacccgggaggcccaatatctgaaactttgaacatcccacggagcaccattaaatccattattaaaaaattgaaagaatatggtaccacaacaaacctgccaagagagggccgcccaccaaaactcacggacca

Function

NR:

description
PREDICTED: high mobility group protein B2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615791 True 209 lncRNA 0.52 1 73540538 73540746

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 148289 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 357796 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 520838 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 521281 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 522999 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 76082 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 185381 73726127 ~ 73731840 (+)
copb1 copb coding downstream 193051 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 204153 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 252889 73793635 ~ 73891981 (+)
G543783 NA non-coding upstream 29598 73510642 ~ 73510940 (+)
G543779 NA non-coding upstream 35145 73505132 ~ 73505393 (+)
G543773 NA non-coding upstream 40358 73499965 ~ 73500180 (+)
G543746 NA non-coding upstream 55633 73484551 ~ 73484905 (+)
G543736 NA non-coding upstream 60400 73479914 ~ 73480138 (+)
G543818 NA non-coding downstream 6455 73547201 ~ 73547743 (+)
G543820 NA non-coding downstream 7130 73547876 ~ 73548204 (+)
G543822 NA non-coding downstream 21621 73562367 ~ 73562593 (+)
G543890 NA non-coding downstream 94220 73634966 ~ 73636604 (+)
G543978 NA non-coding downstream 184461 73725207 ~ 73725676 (+)
G542890 NA other upstream 773687 72765681 ~ 72766851 (+)
saa saa other upstream 873666 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1388144 72151020 ~ 72152394 (+)
G544565 NA other downstream 747032 74287778 ~ 74288138 (+)
G545485 NA other downstream 1697054 75237800 ~ 75238164 (+)
G545601 NA other downstream 1881115 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2387482 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3346686 76827001 ~ 77038395 (+)

Expression


Co-expression Network