G543820


Basic Information

Item Value
gene id G543820
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73547876 ~ 73548204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615801
acagtgtaaaagtccccttccctggtcagtccaacagtgtaaaagttatcttccctggtcattccaacagagtaaaagtcctcttccctggtcagtccaacagtgtaaaagtcctcttccctggtcagtccaacagtgtaaaagtcctcttccctggtcattccaacggtgtaaaagtcctcttccctggtcagtccaagggtgtaaaagtcctcttccctggtcagtccaacacagtgtaaaagtcctcttccctgttcAGTCTAACACAGTGTAAAgatcctcttccctggtcagtccaacacagtgtaaaagtcATTTTCATTGAT

Function

NR:

description
PREDICTED: zinc finger protein 750-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615801 True 329 lncRNA 0.46 1 73547876 73548204

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 155627 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 365134 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 528176 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 528619 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 530337 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 68624 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 177923 73726127 ~ 73731840 (+)
copb1 copb coding downstream 185593 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 196695 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 245431 73793635 ~ 73891981 (+)
G543818 NA non-coding upstream 133 73547201 ~ 73547743 (+)
G543810 NA non-coding upstream 7130 73540538 ~ 73540746 (+)
G543783 NA non-coding upstream 36936 73510642 ~ 73510940 (+)
G543779 NA non-coding upstream 42483 73505132 ~ 73505393 (+)
G543773 NA non-coding upstream 47696 73499965 ~ 73500180 (+)
G543822 NA non-coding downstream 14163 73562367 ~ 73562593 (+)
G543890 NA non-coding downstream 86762 73634966 ~ 73636604 (+)
G543978 NA non-coding downstream 177003 73725207 ~ 73725676 (+)
G543997 NA non-coding downstream 222966 73771170 ~ 73771497 (+)
G542890 NA other upstream 781025 72765681 ~ 72766851 (+)
saa saa other upstream 881004 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1395482 72151020 ~ 72152394 (+)
G544565 NA other downstream 739574 74287778 ~ 74288138 (+)
G545485 NA other downstream 1689596 75237800 ~ 75238164 (+)
G545601 NA other downstream 1873657 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2380024 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3339228 76827001 ~ 77038395 (+)

Expression


Co-expression Network