G543822


Basic Information

Item Value
gene id G543822
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 73562367 ~ 73562593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU615803
cttccctggtcagtccaacagtgtaaaagtcctcttccctggtcagtccaaccgtgtaaaagtcctcttccctggtcagtccaacagtgtaaaagtcctcttccctggtcattccaacggtgtaaaagtcctcttccctggtcagtccaacagtgtaaaagtcctcttccctggtcataccaacagtgtaaaagtcctcttccctggtcattccaacggagtaaaag

Function

NR:

description
PREDICTED: zinc finger protein 750-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU615803 True 227 lncRNA 0.48 1 73562367 73562593

Neighbor

gene id symbol gene type direction distance location
LOC100136290 sox6 coding upstream 170118 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 coding upstream 379625 73037953 ~ 73182742 (+)
LOC118965119 NA coding upstream 542667 73019572 ~ 73019700 (+)
LOC118965096 NA coding upstream 543110 73019055 ~ 73019257 (+)
LOC118965112 NA coding upstream 544828 73017408 ~ 73017539 (+)
LOC110526546 LOC106587531 coding downstream 54235 73616828 ~ 73634948 (+)
LOC110526547 LOC106587501 coding downstream 163534 73726127 ~ 73731840 (+)
copb1 copb coding downstream 171204 73733797 ~ 73741617 (+)
rras2 rras2 coding downstream 182306 73744899 ~ 73789243 (+)
tub LOC106587536 coding downstream 231042 73793635 ~ 73891981 (+)
G543820 NA non-coding upstream 14163 73547876 ~ 73548204 (+)
G543818 NA non-coding upstream 14624 73547201 ~ 73547743 (+)
G543810 NA non-coding upstream 21621 73540538 ~ 73540746 (+)
G543783 NA non-coding upstream 51427 73510642 ~ 73510940 (+)
G543779 NA non-coding upstream 56974 73505132 ~ 73505393 (+)
G543890 NA non-coding downstream 72373 73634966 ~ 73636604 (+)
G543978 NA non-coding downstream 162614 73725207 ~ 73725676 (+)
G543997 NA non-coding downstream 208577 73771170 ~ 73771497 (+)
G544292 NA non-coding downstream 373134 73935727 ~ 73935939 (+)
G542890 NA other upstream 795516 72765681 ~ 72766851 (+)
saa saa other upstream 895495 72665460 ~ 72666872 (+)
G542100 LOC106587475 other upstream 1409973 72151020 ~ 72152394 (+)
G544565 NA other downstream 725185 74287778 ~ 74288138 (+)
G545485 NA other downstream 1675207 75237800 ~ 75238164 (+)
G545601 NA other downstream 1859268 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 2365635 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 3324839 76827001 ~ 77038395 (+)

Expression


Co-expression Network